CK740148

Overview
NameCK740148
Unique NameCK740148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length390
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7096 contig Csv1_Contig7096:650..1039. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740148 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.350e-36
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1
Query:    1 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 228
            PGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  190 PGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265          
BLAST of CK740148 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.350e-36
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1
Query:    1 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 228
            PGG+FDPLGLADDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  190 PGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265          
BLAST of CK740148 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.763e-36
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1
Query:    1 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 228
            PGGSFDPLGLA+DPE  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  189 PGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          
BLAST of CK740148 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.302e-36
Identity = 70/76 (92.11%), Postives = 74/76 (97.37%), Query Frame = 1
Query:    1 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 228
            PGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ DPV NNAWAYATNFVPGK
Sbjct:  190 PGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265          
BLAST of CK740148 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.302e-36
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 1
Query:    1 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 228
            PGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL+DHLADP  NNAWAYATNF PGK
Sbjct:  190 PGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265          
BLAST of CK740148 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.302e-36
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 1
Query:    1 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 228
            PGGSFDPLGLA+ PEAFAELKVKE+KNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  153 PGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228          
BLAST of CK740148 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.007e-36
Identity = 71/76 (93.42%), Postives = 72/76 (94.74%), Query Frame = 1
Query:    1 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 228
            PGGSFDPLGLADDPEA AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT   PGK
Sbjct:  181 PGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256          
BLAST of CK740148 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.007e-36
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 1
Query:    1 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 228
            PGGSFDPLGLA+DPEAFAELKVKE KNGRLAMFSMFGFF+QAIVTGKGPLENLADHL DPVNNNAW+YATNFVP K
Sbjct:  192 PGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267          
BLAST of CK740148 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.927e-36
Identity = 70/76 (92.11%), Postives = 74/76 (97.37%), Query Frame = 1
Query:    1 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 228
            PGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  190 PGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265          
BLAST of CK740148 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.129e-36
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = 1
Query:    1 PGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 228
            PGG+FDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  191 PGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266          
The following BLAST results are available for this feature:
BLAST of CK740148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB23_TOBAC1.350e-3693.42Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_GOSHI1.350e-3693.42Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB23_APIGR1.763e-3693.42Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_SOLLC2.302e-3692.11Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_POLMU2.302e-3692.11Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_PEA2.302e-3693.42Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB22_SOYBN3.007e-3693.42Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_PETSP3.007e-3692.11Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB26_PETSP3.927e-3692.11Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB21_PINTH5.129e-3693.42Chlorophyll a-b binding protein type I, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6642 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740148 ID=CK740148; Name=CK740148; organism=Citrus sinensis; type=EST; length=390bp
CCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTT
TGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCT
CCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTA
GAGAACTTGGCCGACCACTTGGCCGACCCTGTCAACAACAATGCCTGGGC
CTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAACATTA
GTAGCGTGGAAATTGGAATTGAGAGTGATTGGTTATTGATGTGACTCTAT
TTCAACTTGCAAAACATGTGAATTATGTAATGTACTGCTACTACTAGTTT
GAGGGGATTGTATTTTCATTCAAAAAAAAAAAAAAAAAAA
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