CK740152

Overview
NameCK740152
Unique NameCK740152
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740152 vs. ExPASy Swiss-Prot
Match: NIA1_TOBAC (Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN=NIA1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.490e-11
Identity = 27/84 (32.14%), Postives = 52/84 (61.90%), Query Frame = 3
Query:   84 SSEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGHEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 335
            S+  M +  K++   EV  H+     W+I+ G +YD + F+ DHPGG + ++   G D T +F+ + HSD A+++++++ IG++
Sbjct:  523 STPFMNTASKMYSMSEVRKHSSADSAWIIVHGHIYDATRFLKDHPGGSDSILINAGTDCTEEFDAI-HSDKAKKLLEEFRIGEL 605          
BLAST of CK740152 vs. ExPASy Swiss-Prot
Match: NIA2_PHAVU (Nitrate reductase [NADH] 2 OS=Phaseolus vulgaris GN=NIA2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.946e-11
Identity = 30/84 (35.71%), Postives = 50/84 (59.52%), Query Frame = 3
Query:   84 SSEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGHEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 335
            S+  M +  K+    EV  H+     W+I+ G VYD + F+ DHPGG + ++   G D T +F+ + HSD A++M++ Y IG++
Sbjct:  505 STPFMNTASKMFSVSEVKKHSSPDSAWIIVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFDAI-HSDKAKKMLEDYRIGEL 587          
BLAST of CK740152 vs. ExPASy Swiss-Prot
Match: NIA_SPIOL (Nitrate reductase [NADH] OS=Spinacia oleracea GN=NIA PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.541e-11
Identity = 27/84 (32.14%), Postives = 50/84 (59.52%), Query Frame = 3
Query:   84 SSEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGHEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 335
            S+  M +  K++   EV  HN     W+++ G VY+ + F+ DHPGG + ++   G D T +F+ + HSD A+ +++ + IG++
Sbjct:  543 STPFMNTTSKMYSMSEVKKHNTADSAWIVVHGNVYNATRFLKDHPGGSDSILINAGTDCTEEFDAI-HSDKAKRLLEDFRIGEL 625          
BLAST of CK740152 vs. ExPASy Swiss-Prot
Match: NIA1_ORYSJ (Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. japonica GN=NIA1 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 2.541e-11
Identity = 28/78 (35.90%), Postives = 47/78 (60.26%), Query Frame = 3
Query:  102 SDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGHEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 335
            +D K     EV  H+     W+++ G VYD ++F+ DHPGG + ++   G D T +F+ + HSD A+ ++D Y IG++
Sbjct:  539 TDGKQFTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAI-HSDKAKALLDTYRIGEL 615          
BLAST of CK740152 vs. ExPASy Swiss-Prot
Match: FAD5C_DICDI (Probable Delta(5) fatty acid desaturase C OS=Dictyostelium discoideum GN=DDB_G0294553 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.541e-11
Identity = 39/121 (32.23%), Postives = 66/121 (54.55%), Query Frame = 3
Query:  111 KIHQFEEVATHNKTKD-CWLIISGKVYDVSSFMDDHPGGHEVLISATGKDATNDFEDV-GHSDSAREMMDKYYIGDID----PSTVPRKRAYIPLEQPA----YNQDKTPEFIIKILQILV 443
            K++ ++E++ HN  ++  W+ I G VYD++ F+  HPGG +VLI A G+D TN FE     +D   +M+ +Y IG +     P  V + + Y  L++         +K P+F   I+  L+
Sbjct:   10 KLYSWKEISKHNTIENGIWISIDGLVYDITKFIKHHPGGEQVLILAAGRDVTNLFESYHPMTDLPSKMLKQYEIGQVSTMEFPKYVEKSKFYSTLKERVREHFKKSNKDPKFAFGIIARLI 130          
BLAST of CK740152 vs. ExPASy Swiss-Prot
Match: NIA_CHLVU (Nitrate reductase [NADH] (Fragment) OS=Chlorella vulgaris PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.319e-11
Identity = 28/69 (40.58%), Postives = 45/69 (65.22%), Query Frame = 3
Query:  129 EVATHNKTKDCWLIISGKVYDVSSFMDDHPGGHEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 335
            EV TH   +  W ++ GKVYD + F+ DHPGG + ++   G DAT++F  + HS  A++ + +YYIG++
Sbjct:  223 EVETHTTMESAWFVVDGKVYDATPFLKDHPGGADSILLVAGIDATDEFNAI-HSLKAKKQLLEYYIGEL 290          
BLAST of CK740152 vs. ExPASy Swiss-Prot
Match: NIA2_TOBAC (Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN=NIA2 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.319e-11
Identity = 27/84 (32.14%), Postives = 51/84 (60.71%), Query Frame = 3
Query:   84 SSEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGHEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 335
            S+  M +  K++   EV  H+     W+I+ G +YD + F+ DHPGG + ++   G D T +F+ + HSD A+++++ + IG++
Sbjct:  523 STPFMNTASKMYSMSEVRKHSSADSAWIIVHGHIYDATRFLKDHPGGTDSILINAGTDCTEEFDAI-HSDKAKKLLEDFRIGEL 605          
BLAST of CK740152 vs. ExPASy Swiss-Prot
Match: NB5R4_XENTR (Cytochrome b5 reductase 4 OS=Xenopus tropicalis GN=cyb5r4 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.335e-11
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 3
Query:  126 EEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGHEVLISATGKDATNDFEDVGHSDSAREMMDKYYIG 329
            EE+A HNK +DCW+ I G VY+++ +M+ HPGG E L+ A G+D T+ F+ V    +   M+ +  IG
Sbjct:   60 EELAQHNKKEDCWICIRGMVYNITPYMEYHPGGEEELMKAAGRDGTDLFDQVHRWVNYESMLKECLIG 127          
BLAST of CK740152 vs. ExPASy Swiss-Prot
Match: NIA_NEUCR (Nitrate reductase [NADPH] OS=Neurospora crassa GN=nit-3 PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 5.662e-11
Identity = 32/98 (32.65%), Postives = 56/98 (57.14%), Query Frame = 3
Query:  126 EEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGHEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVPRKRAYIPLEQPAYNQDKTPEFI 419
            EE+  H+  ++ W +++G+VY+ + F++ HPGG   +  A G+D T++F  + HS++A+ MM  Y+IG + PS  P          PA +    P F+
Sbjct:  623 EELRQHDGEEEPWFVVNGQVYNGTPFLEGHPGGAASITGAAGQDVTDEFLAI-HSENAKAMMPTYHIGTLTPS-APAALKSSSTSDPALSDPSRPIFL 718          
BLAST of CK740152 vs. ExPASy Swiss-Prot
Match: NIA2_HORVU (Nitrate reductase [NADH] (Fragment) OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.662e-11
Identity = 26/69 (37.68%), Postives = 44/69 (63.77%), Query Frame = 3
Query:  129 EVATHNKTKDCWLIISGKVYDVSSFMDDHPGGHEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 335
            EV  H   +  W+++ G VYD ++F+ DHPGG + ++   G D T +F+ + HSD A+ ++D Y IG++
Sbjct:  542 EVRKHGSKESAWIVVHGHVYDCTAFLKDHPGGADSILINAGSDCTEEFDAI-HSDKAKALLDTYRIGEL 609          
The following BLAST results are available for this feature:
BLAST of CK740152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
NIA1_TOBAC1.490e-1132.14Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN... [more]
NIA2_PHAVU1.946e-1135.71Nitrate reductase [NADH] 2 OS=Phaseolus vulgaris G... [more]
NIA_SPIOL2.541e-1132.14Nitrate reductase [NADH] OS=Spinacia oleracea GN=N... [more]
NIA1_ORYSJ2.541e-1135.90Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. ... [more]
FAD5C_DICDI2.541e-1132.23Probable Delta(5) fatty acid desaturase C OS=Dicty... [more]
NIA_CHLVU3.319e-1140.58Nitrate reductase [NADH] (Fragment) OS=Chlorella v... [more]
NIA2_TOBAC3.319e-1132.14Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN... [more]
NB5R4_XENTR4.335e-1142.65Cytochrome b5 reductase 4 OS=Xenopus tropicalis GN... [more]
NIA_NEUCR5.662e-1132.65Nitrate reductase [NADPH] OS=Neurospora crassa GN=... [more]
NIA2_HORVU5.662e-1137.68Nitrate reductase [NADH] (Fragment) OS=Hordeum vul... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6646 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740152 ID=CK740152; Name=CK740152; organism=Citrus sinensis; type=EST; length=461bp
GTGAGTTTGACTGCTGCAGGCTTTGACATCAACAAAGAGAGAGCCCAAAT
TCTTTTGCTCTCCTCTCTGTCTCTCTCGTCTGCAGTAGTGAACAAATGGC
CTCAGATCCAAAGATTCACCAGTTCGAAGAGGTCGCCACGCACAACAAAA
CTAAGGATTGCTGGCTTATTATTTCTGGCAAGGTGTATGATGTGTCCTCG
TTCATGGATGATCACCCTGGAGGACATGAGGTTTTGATTTCTGCAACTGG
GAAAGATGCAACAAATGACTTTGAAGATGTGGGTCACAGTGACTCCGCTA
GGGAGATGATGGACAAGTACTATATTGGTGACATTGATCCCTCAACTGTT
CCTCGGAAACGTGCATATATTCCACTGGAGCAACCTGCTTACAATCAAGA
CAAGACCCCTGAGTTCATTATTAAGATTCTACAGATTCTTGTGCCGCTCT
TGATATTGGGT
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