CK740152

Overview
NameCK740152
Unique NameCK740152
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8906 contig Csv1_Contig8906:143..603. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740152 vs. ExPASy Swiss-Prot
Match: NIA1_HORVU (Nitrate reductase [NADH] OS=Hordeum vulgare PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.662e-11
Identity = 26/69 (37.68%), Postives = 44/69 (63.77%), Query Frame = 3
Query:  129 EVATHNKTKDCWLIISGKVYDVSSFMDDHPGGHEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 335
            EV  H   +  W+++ G VYD ++F+ DHPGG + ++   G D T +F+ + HSD A+ ++D Y IG++
Sbjct:  545 EVRKHGSKESAWIVVHGHVYDCTAFLKDHPGGADSILINAGSDCTEEFDAI-HSDKAKALLDTYRIGEL 612          
BLAST of CK740152 vs. ExPASy Swiss-Prot
Match: FAD5_MORAP (Delta(5) fatty acid desaturase OS=Mortierella alpina GN=DES1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.394e-11
Identity = 32/81 (39.51%), Postives = 47/81 (58.02%), Query Frame = 3
Query:  111 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGHEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPSTVP 353
            K   +EE+A HN   D +L I G+VYDV+ F+  HPGG + L+   G+D T  FE      +A  +M KYY+G +  + +P
Sbjct:    7 KTFTWEELAAHNTKGDLFLAIRGRVYDVTKFLSRHPGGVDTLLLGAGRDVTPVFEMYHAFGAADAIMKKYYVGTLVSNELP 87          
BLAST of CK740152 vs. ExPASy Swiss-Prot
Match: CYB2_YEAST (Cytochrome b2, mitochondrial OS=Saccharomyces cerevisiae GN=CYB2 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.657e-11
Identity = 43/126 (34.13%), Postives = 65/126 (51.59%), Query Frame = 3
Query:   93 QMASDPKIHQFE------EVATHNKTKDCWLIISGKVYDVSSFMDDHPGGHEVLISATGKDATNDFEDVGHSDSAREMMDKYY-----IGDIDPSTVPRKRAYIPLEQPAYNQDKTPEFIIKILQI 437
            Q+ ++PK+   +      EVA HNK  DCW++I+G VYD++ F+ +HPGG +V+    GKD T  FE +     A  ++DKY      +G +  S  P       L  P Y   +T E I +  Q+
Sbjct:   77 QIDNEPKLDMNKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL----HAPNVIDKYIAPEKKLGPLQGSMPPE------LVCPPYAPGETKEDIARKEQL 192          
The following BLAST results are available for this feature:
BLAST of CK740152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
NIA1_HORVU5.662e-1137.68Nitrate reductase [NADH] OS=Hordeum vulgare PE=3 S... [more]
FAD5_MORAP7.394e-1139.51Delta(5) fatty acid desaturase OS=Mortierella alpi... [more]
CYB2_YEAST9.657e-1134.13Cytochrome b2, mitochondrial OS=Saccharomyces cere... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6646 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740152 ID=CK740152; Name=CK740152; organism=Citrus sinensis; type=EST; length=461bp
GTGAGTTTGACTGCTGCAGGCTTTGACATCAACAAAGAGAGAGCCCAAAT
TCTTTTGCTCTCCTCTCTGTCTCTCTCGTCTGCAGTAGTGAACAAATGGC
CTCAGATCCAAAGATTCACCAGTTCGAAGAGGTCGCCACGCACAACAAAA
CTAAGGATTGCTGGCTTATTATTTCTGGCAAGGTGTATGATGTGTCCTCG
TTCATGGATGATCACCCTGGAGGACATGAGGTTTTGATTTCTGCAACTGG
GAAAGATGCAACAAATGACTTTGAAGATGTGGGTCACAGTGACTCCGCTA
GGGAGATGATGGACAAGTACTATATTGGTGACATTGATCCCTCAACTGTT
CCTCGGAAACGTGCATATATTCCACTGGAGCAACCTGCTTACAATCAAGA
CAAGACCCCTGAGTTCATTATTAAGATTCTACAGATTCTTGTGCCGCTCT
TGATATTGGGT
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