CK740153

Overview
NameCK740153
Unique NameCK740153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: RPPH_BRUAB (RNA pyrophosphohydrolase OS=Brucella abortus GN=rppH PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.379e-20
Identity = 50/114 (43.86%), Postives = 68/114 (59.65%), Query Frame = 3
Query:  186 YRRNVGICLINSSKKIFAASRLDIPDS--------WQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLKFTGKEEE 503
            YR  VG+ ++N +  ++A  R+ IP          WQMPQGGID+ EDP  AALREL EETG++S  +L E   W+ YD PP +   + +   G ++GQ QKWF  +F G E E
Sbjct:   19 YRPCVGLMVLNKAGLVWAGRRIVIPGDEMDGATQLWQMPQGGIDKGEDPAQAALRELYEETGMTSVSLLEEASDWINYDLPPHL---MGLALKGKYRGQTQKWFAYRFEGDESE 129          
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: RPPH_BRUA2 (RNA pyrophosphohydrolase OS=Brucella abortus (strain 2308) GN=rppH PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.379e-20
Identity = 50/114 (43.86%), Postives = 68/114 (59.65%), Query Frame = 3
Query:  186 YRRNVGICLINSSKKIFAASRLDIPDS--------WQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLKFTGKEEE 503
            YR  VG+ ++N +  ++A  R+ IP          WQMPQGGID+ EDP  AALREL EETG++S  +L E   W+ YD PP +   + +   G ++GQ QKWF  +F G E E
Sbjct:   19 YRPCVGLMVLNKAGLVWAGRRIVIPGDEMDGATQLWQMPQGGIDKGEDPAQAALRELYEETGMTSVSLLEEASDWINYDLPPHL---MGLALKGKYRGQTQKWFAYRFEGDESE 129          
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: RPPH_BRUA1 (RNA pyrophosphohydrolase OS=Brucella abortus (strain S19) GN=rppH PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.379e-20
Identity = 50/114 (43.86%), Postives = 68/114 (59.65%), Query Frame = 3
Query:  186 YRRNVGICLINSSKKIFAASRLDIPDS--------WQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLKFTGKEEE 503
            YR  VG+ ++N +  ++A  R+ IP          WQMPQGGID+ EDP  AALREL EETG++S  +L E   W+ YD PP +   + +   G ++GQ QKWF  +F G E E
Sbjct:   19 YRPCVGLMVLNKAGLVWAGRRIVIPGDEMDGATQLWQMPQGGIDKGEDPAQAALRELYEETGMTSVSLLEEASDWINYDLPPHL---MGLALKGKYRGQTQKWFAYRFEGDESE 129          
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: RPPH_AZOC5 (RNA pyrophosphohydrolase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rppH PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.379e-20
Identity = 53/112 (47.32%), Postives = 66/112 (58.93%), Query Frame = 3
Query:  186 YRRNVGICLINSSKKIFAASRLDIPD------SWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLKFTGKEEE 503
            YR  VG+ + N + ++F   RL  P+      SWQMPQGGID+ E+P  AALREL EET + S   L EV  WL+YD P  V         G ++GQ QKWF L+FTG E E
Sbjct:    9 YRPCVGLAIFNRAGQVFLGQRLSGPEHVDATHSWQMPQGGIDKGEEPYEAALRELYEETSIRSVVKLGEVEDWLSYDLPGRVAGEA---WKGKYRGQTQKWFALRFTGDEGE 117          
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: RPPH_SILPO (RNA pyrophosphohydrolase OS=Silicibacter pomeroyi GN=rppH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.413e-20
Identity = 50/109 (45.87%), Postives = 72/109 (66.06%), Query Frame = 3
Query:  186 YRRNVGICLINSSKKIFAASRLDI-PDSWQMPQGGIDENEDPKVAALRELKEETGVSS--AEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLKFTGKEEE 503
            YR  VG+ L+N    +F   R+D   D+WQMPQGG+DE+EDP  AALREL EETGV++   E++AE   WL YD P ++   +     G ++GQ QKW+L +F G++++
Sbjct:   11 YRPCVGVVLMNGDGFVFVGQRMDQNTDAWQMPQGGVDEDEDPFEAALRELWEETGVTADLVEMVAETDGWLPYDLPHDLVPRI---WKGRYRGQEQKWYLFRFLGRDDQ 116          
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: RPPH_BRUSU (RNA pyrophosphohydrolase OS=Brucella suis GN=rppH PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.413e-20
Identity = 50/114 (43.86%), Postives = 68/114 (59.65%), Query Frame = 3
Query:  186 YRRNVGICLINSSKKIFAASRLDIPDS--------WQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLKFTGKEEE 503
            YR  VG+ ++N +  ++A  R+ IP          WQMPQGGID+ EDP  AALREL EETG++S  +L E   W+ YD PP +   + +   G ++GQ QKWF  +F G E E
Sbjct:   19 YRPCVGLMVLNKAGLVWAGRRIVIPGDEMDGATQLWQMPQGGIDKGEDPAQAALRELYEETGMTSVSLLEEASDWINYDLPPHL---VGLALKGKYRGQTQKWFAYRFEGDESE 129          
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: RPPH_BRUSI (RNA pyrophosphohydrolase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rppH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.413e-20
Identity = 50/114 (43.86%), Postives = 68/114 (59.65%), Query Frame = 3
Query:  186 YRRNVGICLINSSKKIFAASRLDIPDS--------WQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLKFTGKEEE 503
            YR  VG+ ++N +  ++A  R+ IP          WQMPQGGID+ EDP  AALREL EETG++S  +L E   W+ YD PP +   + +   G ++GQ QKWF  +F G E E
Sbjct:   19 YRPCVGLMVLNKAGLVWAGRRIVIPGDEMDGATQLWQMPQGGIDKGEDPAQAALRELYEETGMTSVSLLEEASDWINYDLPPHL---VGLALKGKYRGQTQKWFAYRFEGDESE 129          
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: RPPH_BRUO2 (RNA pyrophosphohydrolase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rppH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.413e-20
Identity = 50/114 (43.86%), Postives = 68/114 (59.65%), Query Frame = 3
Query:  186 YRRNVGICLINSSKKIFAASRLDIPDS--------WQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLKFTGKEEE 503
            YR  VG+ ++N +  ++A  R+ IP          WQMPQGGID+ EDP  AALREL EETG++S  +L E   W+ YD PP +   + +   G ++GQ QKWF  +F G E E
Sbjct:   19 YRPCVGLMVLNKAGLVWAGRRIVIPGDEMDGATQLWQMPQGGIDKGEDPAQAALRELYEETGMTSVSLLEEASDWINYDLPPHL---VGLALKGKYRGQTQKWFAYRFEGDESE 129          
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: RPPH_BRUME (RNA pyrophosphohydrolase OS=Brucella melitensis GN=rppH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.413e-20
Identity = 50/114 (43.86%), Postives = 68/114 (59.65%), Query Frame = 3
Query:  186 YRRNVGICLINSSKKIFAASRLDIPDS--------WQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLKFTGKEEE 503
            YR  VG+ ++N +  ++A  R+ IP          WQMPQGGID+ EDP  AALREL EETG++S  +L E   W+ YD PP +   + +   G ++GQ QKWF  +F G E E
Sbjct:   19 YRPCVGLMVLNKAGLVWAGRRIVIPGDEMDGATQLWQMPQGGIDKGEDPAQAALRELYEETGMTSVSLLEEASDWINYDLPPHL---VGLALKGKYRGQTQKWFAYRFEGDESE 129          
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: RPPH_BRUMB (RNA pyrophosphohydrolase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rppH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.413e-20
Identity = 50/114 (43.86%), Postives = 68/114 (59.65%), Query Frame = 3
Query:  186 YRRNVGICLINSSKKIFAASRLDIPDS--------WQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLKFTGKEEE 503
            YR  VG+ ++N +  ++A  R+ IP          WQMPQGGID+ EDP  AALREL EETG++S  +L E   W+ YD PP +   + +   G ++GQ QKWF  +F G E E
Sbjct:   19 YRPCVGLMVLNKAGLVWAGRRIVIPGDEMDGATQLWQMPQGGIDKGEDPAQAALRELYEETGMTSVSLLEEASDWINYDLPPHL---VGLALKGKYRGQTQKWFAYRFEGDESE 129          
The following BLAST results are available for this feature:
BLAST of CK740153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 305
Match NameE-valueIdentityDescription
RPPH_BRUAB3.379e-2043.86RNA pyrophosphohydrolase OS=Brucella abortus GN=rp... [more]
RPPH_BRUA23.379e-2043.86RNA pyrophosphohydrolase OS=Brucella abortus (stra... [more]
RPPH_BRUA13.379e-2043.86RNA pyrophosphohydrolase OS=Brucella abortus (stra... [more]
RPPH_AZOC53.379e-2047.32RNA pyrophosphohydrolase OS=Azorhizobium caulinoda... [more]
RPPH_SILPO4.413e-2045.87RNA pyrophosphohydrolase OS=Silicibacter pomeroyi ... [more]
RPPH_BRUSU4.413e-2043.86RNA pyrophosphohydrolase OS=Brucella suis GN=rppH ... [more]
RPPH_BRUSI4.413e-2043.86RNA pyrophosphohydrolase OS=Brucella suis (strain ... [more]
RPPH_BRUO24.413e-2043.86RNA pyrophosphohydrolase OS=Brucella ovis (strain ... [more]
RPPH_BRUME4.413e-2043.86RNA pyrophosphohydrolase OS=Brucella melitensis GN... [more]
RPPH_BRUMB4.413e-2043.86RNA pyrophosphohydrolase OS=Brucella melitensis bi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6647 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740153 ID=CK740153; Name=CK740153; organism=Citrus sinensis; type=EST; length=607bp
GTTTAAGCCGATCTTTCTCCTCGTATTCCCAGCTTCATCTTTCTTCTCTC
CTCAGTCGCTGCAAGCCTAATTTCACATCCCCAAATTACCCTCATAAACT
CCCCAAATCTACTAACCTGCCACTCGTTCATCATCAGAATCAAATTTGCT
CATCATCATACTCCATGGACGCTCCTCCAGAAGGTTACCGAAGAAATGTC
GGCATCTGTCTCATCAATTCTTCCAAAAAGATTTTCGCCGCTTCGAGACT
TGACATACCTGATAGTTGGCAAATGCCACAGGGCGGTATTGACGAGAATG
AGGATCCCAAAGTTGCTGCCTTAAGGGAATTGAAAGAAGAAACAGGAGTC
AGCTCGGCAGAAGTTCTTGCAGAGGTGCCTTATTGGTTGACATATGACTT
CCCTCCAGAAGTCAGGGAAAACTTAAACATCAATGGGGGAGGTGACTGGA
AAGGTCAAGCACAGAAGTGGTTTCTCCTCAAGTTCACTGGCAAGGAGGAA
GAATCAATCTTCTTGGTGATAATCTGAGAACCTGAGTTGGCGAGTGGAAG
TGGATGTCACCAAACAAATACTTGAGCGTGCTGGGGATTCAAGAACCTGT
TACAAAG
back to top