CK740153

Overview
NameCK740153
Unique NameCK740153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: RPPH_ORITB (RNA pyrophosphohydrolase OS=Orientia tsutsugamushi (strain Boryong) GN=rppH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.978e-18
Identity = 48/107 (44.86%), Postives = 63/107 (58.88%), Query Frame = 3
Query:  186 YRRNVGICLINSSKKIFAASRLDIPDS-WQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLKFTGKEEE 503
            YR  VG+ +IN  K+IF   R+D     WQMPQGGI   E    A LRE+KEE G + A ++AE   W +Y  P  +   L      ++KGQ QKWFL+KF GK+E+
Sbjct:   13 YRIGVGMVIINQKKEIFTGQRIDSARQYWQMPQGGIILGETYSKAVLREMKEEIGCNKAIIMAESRNWYSYHIPKFLVHKL---WNSNFKGQKQKWFLIKFLGKDED 116          

HSP 2 Score: 21.1718 bits (43), Expect = 4.978e-18
Identity = 5/12 (41.67%), Postives = 10/12 (83.33%), Query Frame = 2
Query:  542 EWKWMSPNKYLS 577
            +WKWM+ N+ ++
Sbjct:  128 QWKWMNSNQLIN 139          
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: RPPH_WOLTR (RNA pyrophosphohydrolase OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=rppH PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.046e-18
Identity = 46/106 (43.40%), Postives = 62/106 (58.49%), Query Frame = 3
Query:  186 YRRNVGICLINSSKKIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLKFTGKEEE 503
            YR  VGI L N    +F   R D    WQMPQGGID+ E  + AALREL EE G   A+++A+   W+ Y+ P EV   +     G + GQ Q+WFL+KF G+ ++
Sbjct:    8 YRPCVGIMLFNKQGHVFIGKRFDSDSYWQMPQGGIDDGEKLEQAALRELLEEVGTDKAKIIAKNKDWIYYNLPEEV---IPTCWNGRYSGQKQRWFLMKFYGEGKD 110          
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: RPPH_BARBK (RNA pyrophosphohydrolase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rppH PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.046e-18
Identity = 50/125 (40.00%), Postives = 70/125 (56.00%), Query Frame = 3
Query:  186 YRRNVGICLINSSKKIFAASRL--------DIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLKFTGKEEESIFLVII*EPE 536
            YR+ VGI + N   +++   RL        ++   WQ PQGGIDE E+P  AA REL EETG+ S  ++ EV  W  YDFP E+  ++  N    ++GQ QKWF  +F G+  E    ++I  PE
Sbjct:   12 YRKGVGIVVFNREGQVWIGRRLITSSHTYAEVSKLWQFPQGGIDEGEEPLDAARRELYEETGMRSVNLIKEVQDWFCYDFPQELIGHVLNN---QYRGQMQKWFAFQFIGETSE----IVINSPE 129          
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: RPPH_BARQU (RNA pyrophosphohydrolase OS=Bartonella quintana GN=rppH PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.203e-18
Identity = 47/114 (41.23%), Postives = 65/114 (57.02%), Query Frame = 3
Query:  186 YRRNVGICLINSSKKIFAASRL--------DIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLKFTGKEEE 503
            YRR VG+ + N   K++   RL        ++   WQ+PQGGIDE E+P  AA REL EETG+ S +++ E   W  YDFP ++   +       ++GQ QKWF  +FTGK  E
Sbjct:   12 YRRCVGVVVFNHEGKVWVGRRLTKYAHADTEMSHRWQLPQGGIDEGEEPLDAACRELYEETGIRSIKLIKEARDWFYYDFPQKL---VGCTLKNKYRGQIQKWFAFQFTGKLSE 122          
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: RPPH_SULNB (RNA pyrophosphohydrolase OS=Sulfurovum sp. (strain NBC37-1) GN=rppH PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.202e-17
Identity = 52/123 (42.28%), Postives = 69/123 (56.10%), Query Frame = 3
Query:  180 EGYRRNVGICLINSSK----KIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLKFTGKEEESIFLVII*EPE 536
            + YR NV   +++S      + F A R DI ++WQ PQGGIDE E P+ A  REL EE G ++ E+L E P W+TYDFP   R  +       + GQ QK+FL++   KEE  I L     PE
Sbjct:    5 KSYRPNVAAVILSSKYPEKCEFFVAHRTDIRNAWQFPQGGIDEGETPEDALYRELLEEIGCNNVEILGEFPEWITYDFPKTARGKVY-----PFDGQTQKYFLVRL--KEEAQINLQAFEIPE 120          
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: RPPH_RHOPS (RNA pyrophosphohydrolase OS=Rhodopseudomonas palustris (strain BisB5) GN=rppH PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.202e-17
Identity = 51/112 (45.54%), Postives = 61/112 (54.46%), Query Frame = 3
Query:  186 YRRNVGICLINSSKKIFAASR------LDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLKFTGKEEE 503
            YR  VG+ LIN    +F   R      +D    WQMPQGG+D  ED   AA REL EET V S E + EVP WL YD P  V         G ++GQ QKWF ++FTG + E
Sbjct:    9 YRTCVGMMLINREGLVFIGRRAGGIEHVDDTHVWQMPQGGVDPGEDTWEAAKRELYEETNVRSVEKIGEVPDWLIYDIPRTVAGRA---WKGRYRGQRQKWFAVRFTGADSE 117          
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: RPPH_CAMJR (RNA pyrophosphohydrolase OS=Campylobacter jejuni (strain RM1221) GN=rppH PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.678e-17
Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = 3
Query:  180 EGYRRNVGICLINSSK----KIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLK 482
            + YR NV   +++SS     KIF A R D+ + WQ PQGGID+ E  K A  RELKEE G    E++AE P WL+YDFP ++ + +       + GQ QK+FL++
Sbjct:    5 KNYRPNVAAIVLSSSYPFECKIFIAKRSDMDNIWQFPQGGIDKGESVKNALFRELKEEIGTDEVEIIAEYPEWLSYDFPSKIVKKMY-----PYDGQIQKYFLVR 104          
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: RPPH_CAMJJ (RNA pyrophosphohydrolase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=rppH PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.678e-17
Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = 3
Query:  180 EGYRRNVGICLINSSK----KIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLK 482
            + YR NV   +++SS     KIF A R D+ + WQ PQGGID+ E  K A  RELKEE G    E++AE P WL+YDFP ++ + +       + GQ QK+FL++
Sbjct:    5 KNYRPNVAAIVLSSSYPFECKIFIAKRSDMDNIWQFPQGGIDKGESVKNALFRELKEEIGTDEVEIIAEYPEWLSYDFPSKIVKKMY-----PYDGQIQKYFLVR 104          
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: RPPH_CAMJD (RNA pyrophosphohydrolase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=rppH PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.678e-17
Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = 3
Query:  180 EGYRRNVGICLINSSK----KIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLK 482
            + YR NV   +++SS     KIF A R D+ + WQ PQGGID+ E  K A  RELKEE G    E++AE P WL+YDFP ++ + +       + GQ QK+FL++
Sbjct:    5 KNYRPNVAAIVLSSSYPFECKIFIAKRSDMDNIWQFPQGGIDKGESAKNALFRELKEEIGTDEVEIIAEYPEWLSYDFPGKIVKKMY-----PYDGQIQKYFLVR 104          
BLAST of CK740153 vs. ExPASy Swiss-Prot
Match: RPPH_CAMJ8 (RNA pyrophosphohydrolase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=rppH PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.678e-17
Identity = 46/105 (43.81%), Postives = 64/105 (60.95%), Query Frame = 3
Query:  180 EGYRRNVGICLINSSK----KIFAASRLDIPDSWQMPQGGIDENEDPKVAALRELKEETGVSSAEVLAEVPYWLTYDFPPEVRENLNINGGGDWKGQAQKWFLLK 482
            + YR NV   +++SS     KIF A R D+ + WQ PQGGID+ E  K A  RELKEE G    E++AE P WL+YDFP ++ + +       + GQ QK+FL++
Sbjct:    5 KNYRPNVAAIVLSSSYPFECKIFIAKRSDMDNIWQFPQGGIDKGESVKNALFRELKEEIGTDEVEIIAEYPEWLSYDFPSKIVKKMY-----PYDGQIQKYFLVR 104          
The following BLAST results are available for this feature:
BLAST of CK740153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 305
Match NameE-valueIdentityDescription
RPPH_ORITB4.978e-1844.86RNA pyrophosphohydrolase OS=Orientia tsutsugamushi... [more]
RPPH_WOLTR7.046e-1843.40RNA pyrophosphohydrolase OS=Wolbachia sp. subsp. B... [more]
RPPH_BARBK7.046e-1840.00RNA pyrophosphohydrolase OS=Bartonella bacilliform... [more]
RPPH_BARQU9.203e-1841.23RNA pyrophosphohydrolase OS=Bartonella quintana GN... [more]
RPPH_SULNB1.202e-1742.28RNA pyrophosphohydrolase OS=Sulfurovum sp. (strain... [more]
RPPH_RHOPS1.202e-1745.54RNA pyrophosphohydrolase OS=Rhodopseudomonas palus... [more]
RPPH_CAMJR2.678e-1743.81RNA pyrophosphohydrolase OS=Campylobacter jejuni (... [more]
RPPH_CAMJJ2.678e-1743.81RNA pyrophosphohydrolase OS=Campylobacter jejuni s... [more]
RPPH_CAMJD2.678e-1743.81RNA pyrophosphohydrolase OS=Campylobacter jejuni s... [more]
RPPH_CAMJ82.678e-1743.81RNA pyrophosphohydrolase OS=Campylobacter jejuni s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6647 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740153 ID=CK740153; Name=CK740153; organism=Citrus sinensis; type=EST; length=607bp
GTTTAAGCCGATCTTTCTCCTCGTATTCCCAGCTTCATCTTTCTTCTCTC
CTCAGTCGCTGCAAGCCTAATTTCACATCCCCAAATTACCCTCATAAACT
CCCCAAATCTACTAACCTGCCACTCGTTCATCATCAGAATCAAATTTGCT
CATCATCATACTCCATGGACGCTCCTCCAGAAGGTTACCGAAGAAATGTC
GGCATCTGTCTCATCAATTCTTCCAAAAAGATTTTCGCCGCTTCGAGACT
TGACATACCTGATAGTTGGCAAATGCCACAGGGCGGTATTGACGAGAATG
AGGATCCCAAAGTTGCTGCCTTAAGGGAATTGAAAGAAGAAACAGGAGTC
AGCTCGGCAGAAGTTCTTGCAGAGGTGCCTTATTGGTTGACATATGACTT
CCCTCCAGAAGTCAGGGAAAACTTAAACATCAATGGGGGAGGTGACTGGA
AAGGTCAAGCACAGAAGTGGTTTCTCCTCAAGTTCACTGGCAAGGAGGAA
GAATCAATCTTCTTGGTGATAATCTGAGAACCTGAGTTGGCGAGTGGAAG
TGGATGTCACCAAACAAATACTTGAGCGTGCTGGGGATTCAAGAACCTGT
TACAAAG
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