CK740155

Overview
NameCK740155
Unique NameCK740155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length511
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740155 vs. ExPASy Swiss-Prot
Match: H2B4_WHEAT (Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 7.509e-40
Identity = 83/92 (90.22%), Postives = 88/92 (95.65%), Query Frame = 3
Query:  189 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAGTKFTSS 464
            S+ETYKIYIFKVLKQVHPDIGISSKAM I NSFINDIFEKLA ES++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKA TKFTS+
Sbjct:   44 SMETYKIYIFKVLKQVHPDIGISSKAMSITNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 135          
BLAST of CK740155 vs. ExPASy Swiss-Prot
Match: H2B4_CHLRE (Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 8.303e-39
Identity = 78/91 (85.71%), Postives = 87/91 (95.60%), Query Frame = 3
Query:  189 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAGTKFTS 461
            ++ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKA TKFTS
Sbjct:   62 AVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 152          
BLAST of CK740155 vs. ExPASy Swiss-Prot
Match: H2B3_CHLRE (Histone H2B.3 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 8.303e-39
Identity = 78/91 (85.71%), Postives = 87/91 (95.60%), Query Frame = 3
Query:  189 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAGTKFTS 461
            ++ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKA TKFTS
Sbjct:   62 AVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 152          
BLAST of CK740155 vs. ExPASy Swiss-Prot
Match: H2B2_CHLRE (Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 8.303e-39
Identity = 78/91 (85.71%), Postives = 87/91 (95.60%), Query Frame = 3
Query:  189 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAGTKFTS 461
            ++ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKA TKFTS
Sbjct:   65 AVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 155          
BLAST of CK740155 vs. ExPASy Swiss-Prot
Match: H2B1_CHLRE (Histone H2B.1 OS=Chlamydomonas reinhardtii GN=H2B PE=1 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 8.303e-39
Identity = 78/91 (85.71%), Postives = 87/91 (95.60%), Query Frame = 3
Query:  189 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAGTKFTS 461
            ++ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKA TKFTS
Sbjct:   62 AVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 152          
BLAST of CK740155 vs. ExPASy Swiss-Prot
Match: H2B4_VOLCA (Histone H2B.4 OS=Volvox carteri PE=3 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 1.850e-38
Identity = 78/90 (86.67%), Postives = 86/90 (95.56%), Query Frame = 3
Query:  195 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAGTKFTSS 464
            ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKA TKFTS+
Sbjct:   66 ETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSA 155          
BLAST of CK740155 vs. ExPASy Swiss-Prot
Match: H2B3_VOLCA (Histone H2B.3 OS=Volvox carteri PE=3 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 1.850e-38
Identity = 78/90 (86.67%), Postives = 86/90 (95.56%), Query Frame = 3
Query:  195 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAGTKFTSS 464
            ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKA TKFTS+
Sbjct:   68 ETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSA 157          
BLAST of CK740155 vs. ExPASy Swiss-Prot
Match: H2B_SALTR (Histone H2B OS=Salmo trutta PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.326e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 3
Query:  195 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAGTKFTSS 464
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A ESSRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKA TK+TSS
Sbjct:   34 ESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 123          
BLAST of CK740155 vs. ExPASy Swiss-Prot
Match: H2B_ONCMY (Histone H2B OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.326e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 3
Query:  195 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAGTKFTSS 464
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A ESSRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKA TK+TSS
Sbjct:   34 ESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 123          
BLAST of CK740155 vs. ExPASy Swiss-Prot
Match: H2B_PEA (Histone H2B (Fragments) OS=Pisum sativum GN=HIS2B PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.731e-36
Identity = 78/88 (88.64%), Postives = 81/88 (92.05%), Query Frame = 3
Query:  198 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAGTKFTS 461
            T KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+SRLARYNKK TIT REIQTAVRL+LPGE+AKH VSE TKA TKFTS
Sbjct:   31 TVKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASEASRLARYNKKSTITPREIQTAVRLLLPGEVAKHKVSEATKAVTKFTS 118          
The following BLAST results are available for this feature:
BLAST of CK740155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B4_WHEAT7.509e-4090.22Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 S... [more]
H2B4_CHLRE8.303e-3985.71Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B3_CHLRE8.303e-3985.71Histone H2B.3 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B2_CHLRE8.303e-3985.71Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B1_CHLRE8.303e-3985.71Histone H2B.1 OS=Chlamydomonas reinhardtii GN=H2B ... [more]
H2B4_VOLCA1.850e-3886.67Histone H2B.4 OS=Volvox carteri PE=3 SV=3[more]
H2B3_VOLCA1.850e-3886.67Histone H2B.3 OS=Volvox carteri PE=3 SV=3[more]
H2B_SALTR1.326e-3683.33Histone H2B OS=Salmo trutta PE=1 SV=2[more]
H2B_ONCMY1.326e-3683.33Histone H2B OS=Oncorhynchus mykiss PE=1 SV=2[more]
H2B_PEA1.731e-3688.64Histone H2B (Fragments) OS=Pisum sativum GN=HIS2B ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6649 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740155 ID=CK740155; Name=CK740155; organism=Citrus sinensis; type=EST; length=511bp
TTTACTTTCAATTCCTCGCGAACCCGCAGTTTTTTCTGACGATGGCTCCA
AAGGCGGAGAAGAAGCCAGCGGAGGAGAAGAAGACACCGGTGGCGGAGAA
GGCGCCTGCCGAGAAGAAGCCGAAGGCCGGGAAGAAGCTTCCGAAGGAAG
CCGCAGCCGGTGCTAAGAAGAAGAAGCGCACGAAGAAGAGCATTGAGACG
TACAAGATCTACATATTCAAAGTCCTGAAGCAAGTCCATCCAGATATCGG
AATCTCGAGCAAGGCTATGGGAATTATGAACAGTTTCATCAACGATATTT
TCGAGAAGCTTGCTCAGGAATCTTCCAGGCTGGCAAGGTACAACAAGAAG
CCGACGATAACTTCTCGTGAAATCCAGACCGCTGTGAGACTTGTGCTTCC
TGGTGAGCTGGCTAAGCATGCCGTTTCTGAGGGTACCAAGGCGGGTACCA
AGTTCACCTCGTCTTAATTAGGGTTAGGGTTGACTATGTGCGATGAATTG
GGGGTAGTGAT
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