CK740157

Overview
NameCK740157
Unique NameCK740157
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length523
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:698..1220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK740157 vs. ExPASy Swiss-Prot
Match: ACTG_TRIVU (Actin, cytoplasmic 2 OS=Trichosurus vulpecula GN=ACTG1 PE=1 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 2.953e-82
Identity = 148/174 (85.06%), Postives = 161/174 (92.53%), Query Frame = 2 
Query:    2 KILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKGVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDE 523
            KILTERGY FTTTAEREIVRD+KEKL YVALD+EQE+ TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK +APPERKYSVWIGGSILASLSTFQQMWISK EYDE
Sbjct:  191 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
[Close]
BLAST of CK740157 vs. ExPASy Swiss-Prot
Match: ACTG_TRISC (Actin, cytoplasmic 2 OS=Triakis scyllium GN=actg1 PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 2.953e-82
Identity = 148/174 (85.06%), Postives = 161/174 (92.53%), Query Frame = 2 
Query:    2 KILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKGVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDE 523
            KILTERGY FTTTAEREIVRD+KEKL YVALD+EQE+ TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK +APPERKYSVWIGGSILASLSTFQQMWISK EYDE
Sbjct:  191 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
[Close]
BLAST of CK740157 vs. ExPASy Swiss-Prot
Match: ACTG_RAT (Actin, cytoplasmic 2 OS=Rattus norvegicus GN=Actg1 PE=1 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 2.953e-82
Identity = 148/174 (85.06%), Postives = 161/174 (92.53%), Query Frame = 2 
Query:    2 KILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKGVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDE 523
            KILTERGY FTTTAEREIVRD+KEKL YVALD+EQE+ TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK +APPERKYSVWIGGSILASLSTFQQMWISK EYDE
Sbjct:  191 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
[Close]
BLAST of CK740157 vs. ExPASy Swiss-Prot
Match: ACTG_RANLE (Actin, cytoplasmic 2 OS=Rana lessonae GN=actg1 PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 2.953e-82
Identity = 148/174 (85.06%), Postives = 161/174 (92.53%), Query Frame = 2 
Query:    2 KILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKGVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDE 523
            KILTERGY FTTTAEREIVRD+KEKL YVALD+EQE+ TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK +APPERKYSVWIGGSILASLSTFQQMWISK EYDE
Sbjct:  191 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
[Close]
BLAST of CK740157 vs. ExPASy Swiss-Prot
Match: ACTG_MOUSE (Actin, cytoplasmic 2 OS=Mus musculus GN=Actg1 PE=1 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 2.953e-82
Identity = 148/174 (85.06%), Postives = 161/174 (92.53%), Query Frame = 2 
Query:    2 KILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKGVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDE 523
            KILTERGY FTTTAEREIVRD+KEKL YVALD+EQE+ TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK +APPERKYSVWIGGSILASLSTFQQMWISK EYDE
Sbjct:  191 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
[Close]
BLAST of CK740157 vs. ExPASy Swiss-Prot
Match: ACTG_HUMAN (Actin, cytoplasmic 2 OS=Homo sapiens GN=ACTG1 PE=1 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 2.953e-82
Identity = 148/174 (85.06%), Postives = 161/174 (92.53%), Query Frame = 2 
Query:    2 KILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKGVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDE 523
            KILTERGY FTTTAEREIVRD+KEKL YVALD+EQE+ TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK +APPERKYSVWIGGSILASLSTFQQMWISK EYDE
Sbjct:  191 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
[Close]
BLAST of CK740157 vs. ExPASy Swiss-Prot
Match: ACTG_CHICK (Actin, cytoplasmic 2 OS=Gallus gallus GN=ACTG1 PE=1 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 2.953e-82
Identity = 148/174 (85.06%), Postives = 161/174 (92.53%), Query Frame = 2 
Query:    2 KILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKGVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDE 523
            KILTERGY FTTTAEREIVRD+KEKL YVALD+EQE+ TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK +APPERKYSVWIGGSILASLSTFQQMWISK EYDE
Sbjct:  191 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
[Close]
BLAST of CK740157 vs. ExPASy Swiss-Prot
Match: ACTG_BOVIN (Actin, cytoplasmic 2 OS=Bos taurus GN=ACTG1 PE=1 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 2.953e-82
Identity = 148/174 (85.06%), Postives = 161/174 (92.53%), Query Frame = 2 
Query:    2 KILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKGVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDE 523
            KILTERGY FTTTAEREIVRD+KEKL YVALD+EQE+ TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK +APPERKYSVWIGGSILASLSTFQQMWISK EYDE
Sbjct:  191 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
[Close]
BLAST of CK740157 vs. ExPASy Swiss-Prot
Match: ACTG_ANSAN (Actin, cytoplasmic 2 OS=Anser anser anser GN=ACTG1 PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 2.953e-82
Identity = 148/174 (85.06%), Postives = 161/174 (92.53%), Query Frame = 2 
Query:    2 KILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKGVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDE 523
            KILTERGY FTTTAEREIVRD+KEKL YVALD+EQE+ TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK +APPERKYSVWIGGSILASLSTFQQMWISK EYDE
Sbjct:  191 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
[Close]
BLAST of CK740157 vs. ExPASy Swiss-Prot
Match: ACTB_TRIVU (Actin, cytoplasmic 1 OS=Trichosurus vulpecula GN=ACTB PE=1 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 2.953e-82
Identity = 148/174 (85.06%), Postives = 161/174 (92.53%), Query Frame = 2 
Query:    2 KILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKGVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDE 523
            KILTERGY FTTTAEREIVRD+KEKL YVALD+EQE+ TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK +APPERKYSVWIGGSILASLSTFQQMWISK EYDE
Sbjct:  191 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
The following BLAST results are available for this feature:
BLAST of CK740157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 477
Match NameE-valueIdentityDescription
ACTG_TRIVU2.953e-8285.06Actin, cytoplasmic 2 OS=Trichosurus vulpecula GN=A... [more]
ACTG_TRISC2.953e-8285.06Actin, cytoplasmic 2 OS=Triakis scyllium GN=actg1 ... [more]
ACTG_RAT2.953e-8285.06Actin, cytoplasmic 2 OS=Rattus norvegicus GN=Actg1... [more]
ACTG_RANLE2.953e-8285.06Actin, cytoplasmic 2 OS=Rana lessonae GN=actg1 PE=... [more]
ACTG_MOUSE2.953e-8285.06Actin, cytoplasmic 2 OS=Mus musculus GN=Actg1 PE=1... [more]
ACTG_HUMAN2.953e-8285.06Actin, cytoplasmic 2 OS=Homo sapiens GN=ACTG1 PE=1... [more]
ACTG_CHICK2.953e-8285.06Actin, cytoplasmic 2 OS=Gallus gallus GN=ACTG1 PE=... [more]
ACTG_BOVIN2.953e-8285.06Actin, cytoplasmic 2 OS=Bos taurus GN=ACTG1 PE=1 S... [more]
ACTG_ANSAN2.953e-8285.06Actin, cytoplasmic 2 OS=Anser anser anser GN=ACTG1... [more]
ACTB_TRIVU2.953e-8285.06Actin, cytoplasmic 1 OS=Trichosurus vulpecula GN=A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6651 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740157 ID=CK740157; Name=CK740157; organism=Citrus sinensis; type=EST; length=523bp
GAAGATTCTTACTGAGAGAGGTTACATGTTTACCACCACAGCCGAACGGG
AAATTGTCCGTGACATGAAGGAGAAGCTTGCTTATGTTGCCCTAGACTAT
GAGCAAGAACTTGAGACTGCCAAGAGCAGCTCATCTGTTGAGAAGAACTA
TGAGCTGCCTGATGGCCAGATCATCACCATTGGAGCTGAAAGATTCCGTT
GCCCAGAAGTTCTGTTCCAGCCATCTCTCATCGGAATGGAAGCTGCTGGT
ATTCATGAGACTACCTACAACTCCATCATGAAGTGTGATGTGGATATTAG
AAAGGATCTGTATGGTAACATTGTTCTCAGTGGGGGTTCAACTATGTTCC
CCGGTATTGCCGACCGTATGAGCAAGGAAATCACAGCACTTGCTCCAAGC
AGCATGAAGATCAAGGGCGTGGCTCCACCAGAGAGAAAATACAGTGTTTG
GATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGA
TCTCAAAGGGCGAGTATGATGAG
back to top