CK740158

Overview
NameCK740158
Unique NameCK740158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740158_ssr64 microsatellite CK740158_ssr64:64..73. BLAST: Citrus ESTs to Prunus persica proteins V1
CK740158_ssr228 microsatellite CK740158_ssr228:228..239. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5660 contig Csv1_Contig5660:378..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B9_ARATH (Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570 PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 2.345e-38
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 3 
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            S ETYKIYIFKVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT
Sbjct:   41 STETYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 123
[Close]
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B4_ARATH (Histone H2B.4 OS=Arabidopsis thaliana GN=At2g37470 PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 2.345e-38
Identity = 78/83 (93.98%), Postives = 82/83 (98.80%), Query Frame = 3 
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            S+ETYKIYIFKVLKQVHPD+GIS KAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT
Sbjct:   48 SVETYKIYIFKVLKQVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 130
[Close]
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B10_ARATH (Histone H2B.10 OS=Arabidopsis thaliana GN=At5g22880 PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 2.345e-38
Identity = 80/94 (85.11%), Postives = 85/94 (90.43%), Query Frame = 3 
Query:  219 SGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            +GD        ++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT
Sbjct:   43 AGDKKKKRSKKNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAGESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 136
[Close]
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B8_ARATH (Histone H2B.8 OS=Arabidopsis thaliana GN=At3g53650 PE=1 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 3.062e-38
Identity = 79/83 (95.18%), Postives = 82/83 (98.80%), Query Frame = 3 
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            +IETYKIYIFKVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGEL+KHAVSEGT
Sbjct:   47 NIETYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELSKHAVSEGT 129
[Close]
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B2_MEDTR (Probable histone H2B.2 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 3.062e-38
Identity = 80/94 (85.11%), Postives = 84/94 (89.36%), Query Frame = 3 
Query:  219 SGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            +G+        S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL QE+SRLARYNKKPTITSREIQTAVRLVLPGELAKH VSEGT
Sbjct:   46 AGEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHDVSEGT 139
[Close]
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B1_ORYSJ (Histone H2B.1 OS=Oryza sativa subsp. japonica GN=H2B1 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.062e-38
Identity = 79/83 (95.18%), Postives = 82/83 (98.80%), Query Frame = 3 
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGT
Sbjct:   61 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGT 143
[Close]
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B1_ORYSI (Histone H2B.1 OS=Oryza sativa subsp. indica GN=OsI_010709 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.062e-38
Identity = 79/83 (95.18%), Postives = 82/83 (98.80%), Query Frame = 3 
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGT
Sbjct:   61 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGT 143
[Close]
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B11_ORYSJ (Histone H2B.11 OS=Oryza sativa subsp. japonica GN=H2B.11 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.062e-38
Identity = 79/83 (95.18%), Postives = 82/83 (98.80%), Query Frame = 3 
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGT
Sbjct:   48 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGT 130
[Close]
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B11_ORYSI (Histone H2B.11 OS=Oryza sativa subsp. indica GN=H2B.11 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.062e-38
Identity = 79/83 (95.18%), Postives = 82/83 (98.80%), Query Frame = 3 
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGT
Sbjct:   48 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGT 130
[Close]
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B2_SOLLC (Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 4.000e-38
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 3 
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            SIETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQE+SRLAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGT
Sbjct:   49 SIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVLPGELAKHAVSEGT 131
The following BLAST results are available for this feature:
BLAST of CK740158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B9_ARATH2.345e-3896.39Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570... [more]
H2B4_ARATH2.345e-3893.98Histone H2B.4 OS=Arabidopsis thaliana GN=At2g37470... [more]
H2B10_ARATH2.345e-3885.11Histone H2B.10 OS=Arabidopsis thaliana GN=At5g2288... [more]
H2B8_ARATH3.062e-3895.18Histone H2B.8 OS=Arabidopsis thaliana GN=At3g53650... [more]
H2B2_MEDTR3.062e-3885.11Probable histone H2B.2 OS=Medicago truncatula PE=3... [more]
H2B1_ORYSJ3.062e-3895.18Histone H2B.1 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B1_ORYSI3.062e-3895.18Histone H2B.1 OS=Oryza sativa subsp. indica GN=OsI... [more]
H2B11_ORYSJ3.062e-3895.18Histone H2B.11 OS=Oryza sativa subsp. japonica GN=... [more]
H2B11_ORYSI3.062e-3895.18Histone H2B.11 OS=Oryza sativa subsp. indica GN=H2... [more]
H2B2_SOLLC4.000e-3896.39Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6652 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740158 ID=CK740158; Name=CK740158; organism=Citrus sinensis; type=EST; length=502bp
CCTCGTGCGCACGAGGATCGTTTCGAAGTAAAAGGAAAAGAAAATATCTA
CAAGCCTTGCCTTTCTCTCTCTCTACCAAACCGAAATTAATGGCACCAAA
GGCGGAGAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGAAGACAT
CGGTGGCCGAGAAGGCGCCGGCGGAGAAGAAGCCGAAGGCCGGCAAGAAG
CTTCCCAAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGCGAAGAA
GAGCATCGAGACGTACAAGATTTACATCTTCAAAGTCCTGAAGCAGGTAC
ATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAGTTTC
ATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTGCAAG
GTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACCGCTGTGA
GACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGAGGGTACC
AA
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