CK740158

Overview
NameCK740158
Unique NameCK740158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740158_ssr64 microsatellite CK740158_ssr64:64..73. BLAST: Citrus ESTs to Prunus persica proteins V1
CK740158_ssr228 microsatellite CK740158_ssr228:228..239. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5660 contig Csv1_Contig5660:378..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B1_SOLLC (Histone H2B.1 OS=Solanum lycopersicum GN=H2B-1 PE=2 SV=4)

HSP 1 Score: 156.762 bits (395), Expect = 5.224e-38
Identity = 79/83 (95.18%), Postives = 82/83 (98.80%), Query Frame = 3
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            S+ETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQE+SRLAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGT
Sbjct:   51 SVETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVLPGELAKHAVSEGT 133          
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B6_ORYSJ (Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H2B.6 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.520e-37
Identity = 78/83 (93.98%), Postives = 81/83 (97.59%), Query Frame = 3
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 144          
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B_TOBAC (Histone H2B OS=Nicotiana tabacum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 3.386e-37
Identity = 78/94 (82.98%), Postives = 84/94 (89.36%), Query Frame = 3
Query:  219 SGDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            +GD        S+ETYKIYIF+VLK VHPDIGISSKAMGIMNSFINDIFEKLA+E+SRLA YNKKPTI+SREIQTAVRLVLPGELAKHAVSEGT
Sbjct:   44 AGDKKKKRAEMSVETYKIYIFRVLKHVHPDIGISSKAMGIMNSFINDIFEKLARESSRLAGYNKKPTISSREIQTAVRLVLPGELAKHAVSEGT 137          
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B9_ORYSJ (Histone H2B.9 OS=Oryza sativa subsp. japonica GN=H2B.9 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.386e-37
Identity = 77/83 (92.77%), Postives = 81/83 (97.59%), Query Frame = 3
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGT
Sbjct:   61 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGT 143          
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B9_ORYSI (Histone H2B.9 OS=Oryza sativa subsp. indica GN=H2B.9 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.386e-37
Identity = 77/83 (92.77%), Postives = 81/83 (97.59%), Query Frame = 3
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGT
Sbjct:   61 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGT 143          
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B5_ORYSJ (Histone H2B.5 OS=Oryza sativa subsp. japonica GN=H2B.5 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.386e-37
Identity = 77/83 (92.77%), Postives = 81/83 (97.59%), Query Frame = 3
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGT
Sbjct:   64 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGT 146          
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B5_ORYSI (Histone H2B.5 OS=Oryza sativa subsp. indica GN=H2B.5 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.386e-37
Identity = 77/83 (92.77%), Postives = 81/83 (97.59%), Query Frame = 3
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGT
Sbjct:   64 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGT 146          
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B5_MAIZE (Histone H2B.5 OS=Zea mays PE=2 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 3.386e-37
Identity = 77/83 (92.77%), Postives = 81/83 (97.59%), Query Frame = 3
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGT
Sbjct:   63 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGT 145          
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B4_MAIZE (Histone H2B.4 OS=Zea mays PE=3 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 3.386e-37
Identity = 77/83 (92.77%), Postives = 81/83 (97.59%), Query Frame = 3
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGT
Sbjct:   46 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGT 128          
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B2_MAIZE (Histone H2B.2 OS=Zea mays PE=2 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 3.386e-37
Identity = 77/83 (92.77%), Postives = 81/83 (97.59%), Query Frame = 3
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGT
Sbjct:   59 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGT 141          
The following BLAST results are available for this feature:
BLAST of CK740158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B1_SOLLC5.224e-3895.18Histone H2B.1 OS=Solanum lycopersicum GN=H2B-1 PE=... [more]
H2B6_ORYSJ1.520e-3793.98Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B_TOBAC3.386e-3782.98Histone H2B OS=Nicotiana tabacum GN=HIS2B PE=2 SV=... [more]
H2B9_ORYSJ3.386e-3792.77Histone H2B.9 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B9_ORYSI3.386e-3792.77Histone H2B.9 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B5_ORYSJ3.386e-3792.77Histone H2B.5 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B5_ORYSI3.386e-3792.77Histone H2B.5 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B5_MAIZE3.386e-3792.77Histone H2B.5 OS=Zea mays PE=2 SV=3[more]
H2B4_MAIZE3.386e-3792.77Histone H2B.4 OS=Zea mays PE=3 SV=3[more]
H2B2_MAIZE3.386e-3792.77Histone H2B.2 OS=Zea mays PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6652 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740158 ID=CK740158; Name=CK740158; organism=Citrus sinensis; type=EST; length=502bp
CCTCGTGCGCACGAGGATCGTTTCGAAGTAAAAGGAAAAGAAAATATCTA
CAAGCCTTGCCTTTCTCTCTCTCTACCAAACCGAAATTAATGGCACCAAA
GGCGGAGAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGAAGACAT
CGGTGGCCGAGAAGGCGCCGGCGGAGAAGAAGCCGAAGGCCGGCAAGAAG
CTTCCCAAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGCGAAGAA
GAGCATCGAGACGTACAAGATTTACATCTTCAAAGTCCTGAAGCAGGTAC
ATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAGTTTC
ATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTGCAAG
GTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACCGCTGTGA
GACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGAGGGTACC
AA
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