CK740158

Overview
NameCK740158
Unique NameCK740158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740158_ssr64 microsatellite CK740158_ssr64:64..73. BLAST: Citrus ESTs to Prunus persica proteins V1
CK740158_ssr228 microsatellite CK740158_ssr228:228..239. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5660 contig Csv1_Contig5660:378..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B4_ORYSJ (Histone H2B.4 OS=Oryza sativa subsp. japonica GN=H2B.4 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 9.851e-37
Identity = 76/83 (91.57%), Postives = 81/83 (97.59%), Query Frame = 3 
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGT
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGT 144
[Close]
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B4_ORYSI (Histone H2B.4 OS=Oryza sativa subsp. indica GN=H2B.4 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 9.851e-37
Identity = 76/83 (91.57%), Postives = 81/83 (97.59%), Query Frame = 3 
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGT
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGT 144
[Close]
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B3_WHEAT (Histone H2B.3 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 9.851e-37
Identity = 76/83 (91.57%), Postives = 81/83 (97.59%), Query Frame = 3 
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGT
Sbjct:   47 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGT 129
[Close]
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B3_ORYSJ (Histone H2B.3 OS=Oryza sativa subsp. japonica GN=H2B.3 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 9.851e-37
Identity = 76/83 (91.57%), Postives = 81/83 (97.59%), Query Frame = 3 
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGT
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGT 144
[Close]
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B3_ORYSI (Histone H2B.3 OS=Oryza sativa subsp. indica GN=H2B.3 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 9.851e-37
Identity = 76/83 (91.57%), Postives = 81/83 (97.59%), Query Frame = 3 
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGT
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGT 144
[Close]
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B3_MAIZE (Histone H2B.3 OS=Zea mays PE=3 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 9.851e-37
Identity = 75/83 (90.36%), Postives = 81/83 (97.59%), Query Frame = 3 
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPT+TSREIQT+VRLVLPGELAKHAVSEGT
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYNKKPTVTSREIQTSVRLVLPGELAKHAVSEGT 144
[Close]
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B10_ORYSJ (Histone H2B.10 OS=Oryza sativa subsp. japonica GN=H2B.10 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 9.851e-37
Identity = 76/83 (91.57%), Postives = 81/83 (97.59%), Query Frame = 3 
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGT
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGT 144
[Close]
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B10_ORYSI (Histone H2B.10 OS=Oryza sativa subsp. indica GN=H2B.10 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 9.851e-37
Identity = 76/83 (91.57%), Postives = 81/83 (97.59%), Query Frame = 3 
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGT
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGT 144
[Close]
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B5_ARATH (Histone H2B.5 OS=Arabidopsis thaliana GN=At3g09480 PE=1 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 1.680e-36
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 3 
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            S ETYKIY+FKVLKQVHPDIGIS KAMGIMNSFIND FEK+A E+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT
Sbjct:   35 STETYKIYLFKVLKQVHPDIGISGKAMGIMNSFINDTFEKIALESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 117
[Close]
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B2_WHEAT (Histone H2B.2 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 2.866e-36
Identity = 75/82 (91.46%), Postives = 80/82 (97.56%), Query Frame = 3 
Query:  255 IETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            +ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGT
Sbjct:   60 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGT 141
The following BLAST results are available for this feature:
BLAST of CK740158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B4_ORYSJ9.851e-3791.57Histone H2B.4 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B4_ORYSI9.851e-3791.57Histone H2B.4 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B3_WHEAT9.851e-3791.57Histone H2B.3 OS=Triticum aestivum PE=1 SV=3[more]
H2B3_ORYSJ9.851e-3791.57Histone H2B.3 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B3_ORYSI9.851e-3791.57Histone H2B.3 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B3_MAIZE9.851e-3790.36Histone H2B.3 OS=Zea mays PE=3 SV=3[more]
H2B10_ORYSJ9.851e-3791.57Histone H2B.10 OS=Oryza sativa subsp. japonica GN=... [more]
H2B10_ORYSI9.851e-3791.57Histone H2B.10 OS=Oryza sativa subsp. indica GN=H2... [more]
H2B5_ARATH1.680e-3691.57Histone H2B.5 OS=Arabidopsis thaliana GN=At3g09480... [more]
H2B2_WHEAT2.866e-3691.46Histone H2B.2 OS=Triticum aestivum PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6652 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740158 ID=CK740158; Name=CK740158; organism=Citrus sinensis; type=EST; length=502bp
CCTCGTGCGCACGAGGATCGTTTCGAAGTAAAAGGAAAAGAAAATATCTA
CAAGCCTTGCCTTTCTCTCTCTCTACCAAACCGAAATTAATGGCACCAAA
GGCGGAGAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGAAGACAT
CGGTGGCCGAGAAGGCGCCGGCGGAGAAGAAGCCGAAGGCCGGCAAGAAG
CTTCCCAAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGCGAAGAA
GAGCATCGAGACGTACAAGATTTACATCTTCAAAGTCCTGAAGCAGGTAC
ATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAGTTTC
ATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTGCAAG
GTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACCGCTGTGA
GACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGAGGGTACC
AA
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