CK740158

Overview
NameCK740158
Unique NameCK740158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740158_ssr64 microsatellite CK740158_ssr64:64..73. BLAST: Citrus ESTs to Prunus persica proteins V1
CK740158_ssr228 microsatellite CK740158_ssr228:228..239. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5660 contig Csv1_Contig5660:378..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B4_WHEAT (Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 8.340e-36
Identity = 75/83 (90.36%), Postives = 80/83 (96.39%), Query Frame = 3
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            S+ETYKIYIFKVLKQVHPDIGISSKAM I NSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGT
Sbjct:   44 SMETYKIYIFKVLKQVHPDIGISSKAMSITNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGT 126          
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B4_CHLRE (Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 1.423e-35
Identity = 72/83 (86.75%), Postives = 80/83 (96.39%), Query Frame = 3
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            ++ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGT
Sbjct:   62 AVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGT 144          
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B3_CHLRE (Histone H2B.3 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 1.423e-35
Identity = 72/83 (86.75%), Postives = 80/83 (96.39%), Query Frame = 3
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            ++ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGT
Sbjct:   62 AVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGT 144          
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B2_CHLRE (Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 1.423e-35
Identity = 72/83 (86.75%), Postives = 80/83 (96.39%), Query Frame = 3
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            ++ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGT
Sbjct:   65 AVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGT 147          
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B1_CHLRE (Histone H2B.1 OS=Chlamydomonas reinhardtii GN=H2B PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 1.423e-35
Identity = 72/83 (86.75%), Postives = 80/83 (96.39%), Query Frame = 3
Query:  252 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            ++ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGT
Sbjct:   62 AVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGT 144          
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B4_VOLCA (Histone H2B.4 OS=Volvox carteri PE=3 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 4.139e-35
Identity = 72/81 (88.89%), Postives = 78/81 (96.30%), Query Frame = 3
Query:  258 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGT
Sbjct:   66 ETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGT 146          
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B3_VOLCA (Histone H2B.3 OS=Volvox carteri PE=3 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 4.139e-35
Identity = 72/81 (88.89%), Postives = 78/81 (96.30%), Query Frame = 3
Query:  258 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGT
Sbjct:   68 ETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGT 148          
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B_PEA (Histone H2B (Fragments) OS=Pisum sativum GN=HIS2B PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 2.966e-33
Identity = 72/80 (90.00%), Postives = 74/80 (92.50%), Query Frame = 3
Query:  261 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            T KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA EASRLARYNKK TIT REIQTAVRL+LPGE+AKH VSE T
Sbjct:   31 TVKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASEASRLARYNKKSTITPREIQTAVRLLLPGEVAKHKVSEAT 110          
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B3B_MOUSE (Histone H2B type 3-B OS=Mus musculus GN=Hist3h2bb PE=1 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 3.874e-33
Identity = 67/81 (82.72%), Postives = 76/81 (93.83%), Query Frame = 3
Query:  258 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGT
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGT 116          
BLAST of CK740158 vs. ExPASy Swiss-Prot
Match: H2B3B_HUMAN (Histone H2B type 3-B OS=Homo sapiens GN=HIST3H2BB PE=1 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 3.874e-33
Identity = 67/81 (82.72%), Postives = 76/81 (93.83%), Query Frame = 3
Query:  258 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGT 500
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGT
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGT 116          
The following BLAST results are available for this feature:
BLAST of CK740158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B4_WHEAT8.340e-3690.36Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 S... [more]
H2B4_CHLRE1.423e-3586.75Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B3_CHLRE1.423e-3586.75Histone H2B.3 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B2_CHLRE1.423e-3586.75Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B1_CHLRE1.423e-3586.75Histone H2B.1 OS=Chlamydomonas reinhardtii GN=H2B ... [more]
H2B4_VOLCA4.139e-3588.89Histone H2B.4 OS=Volvox carteri PE=3 SV=3[more]
H2B3_VOLCA4.139e-3588.89Histone H2B.3 OS=Volvox carteri PE=3 SV=3[more]
H2B_PEA2.966e-3390.00Histone H2B (Fragments) OS=Pisum sativum GN=HIS2B ... [more]
H2B3B_MOUSE3.874e-3382.72Histone H2B type 3-B OS=Mus musculus GN=Hist3h2bb ... [more]
H2B3B_HUMAN3.874e-3382.72Histone H2B type 3-B OS=Homo sapiens GN=HIST3H2BB ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6652 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740158 ID=CK740158; Name=CK740158; organism=Citrus sinensis; type=EST; length=502bp
CCTCGTGCGCACGAGGATCGTTTCGAAGTAAAAGGAAAAGAAAATATCTA
CAAGCCTTGCCTTTCTCTCTCTCTACCAAACCGAAATTAATGGCACCAAA
GGCGGAGAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGAAGACAT
CGGTGGCCGAGAAGGCGCCGGCGGAGAAGAAGCCGAAGGCCGGCAAGAAG
CTTCCCAAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGCGAAGAA
GAGCATCGAGACGTACAAGATTTACATCTTCAAAGTCCTGAAGCAGGTAC
ATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAGTTTC
ATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTGCAAG
GTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACCGCTGTGA
GACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGAGGGTACC
AA
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