CK740162

Overview
NameCK740162
Unique NameCK740162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length519
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11531 contig Csv1_Contig11531:200..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_SULSO (30S ribosomal protein S4P OS=Sulfolobus solfataricus GN=rps4p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.940e-16
Identity = 45/129 (34.88%), Postives = 74/129 (57.36%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 388
            E+W  Q  + + R+ AR LL L      R    + L+ ++ + G L++    +D +L+LT ++ LERRLQT+V+K G++ +I+ AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   40 EIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIYQARQLITHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_ARCFU (30S ribosomal protein S4P OS=Archaeoglobus fulgidus GN=rps4p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.354e-15
Identity = 48/127 (37.80%), Postives = 74/127 (58.27%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTL----DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 370
            ELWR Q  L + R  ARDLL       ++      + + +++++++ G L E+   LD +L L+VE+FLERRLQT+V++ G+A++I  AR  I   HI V  + V  PSF+V  + +  I F   SP
Sbjct:   40 ELWRFQNILRKYRRVARDLLAEIGLPGKEGEIAKAKAQTVIKKLNKMGILPENAT-LDDILNLSVEDFLERRLQTMVYRQGLARTIKQARQFITHGHIAVDGRRVTSPSFIVTKELESKISFYRNSP 165          
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_AERPE (30S ribosomal protein S4P OS=Aeropyrum pernix GN=rps4p PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.354e-15
Identity = 44/124 (35.48%), Postives = 70/124 (56.45%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 373
            ELW+ +    R R+ AR LL L  +  R       L+  ++R G ++     +D VL +  E  LERRLQT+V+K G+AK+I+ AR L+   HI +  + V  P ++V  + +K I+++  SPF
Sbjct:   40 ELWKAETLARRFRHRARSLLGLPPEVRREA--SRVLVESLYRMGLIDNPNVDIDEVLGINAEKVLERRLQTIVYKKGLAKTIYQARQLVVHGHIAIAGRRVTSPGYLVSREEEKLIDYAPGSPF 161          
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_SULIY (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.017e-15
Identity = 45/129 (34.88%), Postives = 72/129 (55.81%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 388
            E+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   40 EIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_SULIN (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.017e-15
Identity = 45/129 (34.88%), Postives = 72/129 (55.81%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 388
            E+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   40 EIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_SULIM (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.017e-15
Identity = 45/129 (34.88%), Postives = 72/129 (55.81%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 388
            E+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   40 EIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_SULIL (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.017e-15
Identity = 45/129 (34.88%), Postives = 72/129 (55.81%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 388
            E+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   40 EIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_SULIK (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.017e-15
Identity = 45/129 (34.88%), Postives = 72/129 (55.81%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 388
            E+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   40 EIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_SULIA (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.16.27) GN=rps4p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.017e-15
Identity = 45/129 (34.88%), Postives = 72/129 (55.81%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 388
            E+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   40 EIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_METTP (30S ribosomal protein S4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps4p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.017e-15
Identity = 47/133 (35.34%), Postives = 74/133 (55.64%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTLDEKNPRRI-FEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGR 394
            ELW+ +  L + R   R LL    +   R   E  A++ R+ R+G L++  + LD +L+L + + LERRLQT V++ G+A +I  AR  I   HI+V  Q V +PS++V+   +  I++   SP    G P R
Sbjct:   40 ELWKAESILRKYRRVGRMLLASKARGEARADIEAAAVINRLSRFGILKDGAD-LDAILSLKITDILERRLQTQVYRQGLANTIRQARQFITHGHIQVAGQRVTVPSYLVKRGDEMTIDYYAGSPLAREGHPER 171          
The following BLAST results are available for this feature:
BLAST of CK740162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS4_SULSO7.940e-1634.8830S ribosomal protein S4P OS=Sulfolobus solfataric... [more]
RS4_ARCFU1.354e-1537.8030S ribosomal protein S4P OS=Archaeoglobus fulgidu... [more]
RS4_AERPE1.354e-1535.4830S ribosomal protein S4P OS=Aeropyrum pernix GN=r... [more]
RS4_SULIY3.017e-1534.8830S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIN3.017e-1534.8830S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIM3.017e-1534.8830S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIL3.017e-1534.8830S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIK3.017e-1534.8830S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIA3.017e-1534.8830S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_METTP3.017e-1535.3430S ribosomal protein S4P OS=Methanosaeta thermoph... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6656 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740162 ID=CK740162; Name=CK740162; organism=Citrus sinensis; type=EST; length=519bp
GGAACTCTGGAGGGTTCAATATGCACTGAGCCGCATCCGAAATGCTGCGA
GGGATCTTCTCACTCTCGATGAGAAGAACCCACGTCGTATTTTCGAGGGT
GAGGCTCTTCTCAGGAGGATGCACAGGTACGGCTTCTTGGAAGAGAGCCA
GAACAAGCTTGATTATGTGTTGGCCCTCACTGTGGAGAACTTTCTTGAGC
GTCGTCTCCAGACCCTTGTGTTCAAGAGTGGCATGGCTAAGTCAATTCAC
CATGCTCGAGTGCTCATCAGGCAGAGGCACATTAGGGTTGGAAGGCAGCT
TGTCAACATTCCCTCATTTGTAGTGAGGGTTGATTCCCAGAAGCACATTG
AATTCTCACTGACAAGTCCATTCGGAGGTGGCCGCCCTGGAAGAGTGAAG
AGAAGGAACATCAAGGCTGCTGCCAAGAAGGCCGCAGGTGGAGATGGAGA
TGAAGAGGATGAAGAATAAATTACCTGTGTGAACAGATAGTTTTTTTATG
GGTACAGTAGGAATTCTGG
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