CK740162

Overview
NameCK740162
Unique NameCK740162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length519
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11531 contig Csv1_Contig11531:200..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_THENV (30S ribosomal protein S4P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.706e-14
Identity = 46/110 (41.82%), Postives = 65/110 (59.09%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 325
            ELW  +  L  I   AR LL  T +E+ P  +        ++++ GF+E+    LD VL+L V   LERRLQT+V++ G+AKSI+HAR LI   HI V  + V+ P F+V
Sbjct:   42 ELWLARAHLKWIVRRARSLLSMTAEERAPLEL----PFKEKLYKMGFIEDPNVPLDRVLSLDVRAILERRLQTIVYRMGLAKSIYHARQLIVHGHIAVAGRRVSSPGFLV 147          
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_PYRIL (30S ribosomal protein S4P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.268e-13
Identity = 44/118 (37.29%), Postives = 68/118 (57.63%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTL--DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHI 349
            ELW  +  L  I   AR LL++  +E+ P  +        ++++ GF+E+    LD +L+L V   LERRLQT+V++ G+AKSI+HAR L+   H+ V  + V  P F+V  D +  I
Sbjct:   42 ELWLARAHLKWIVRRARSLLSMTPEERAPLEL----PFKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTIVYRKGLAKSIYHARQLVVHGHVAVAGRRVTSPGFLVPRDLEDKI 155          
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_METBF (30S ribosomal protein S4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.656e-13
Identity = 44/129 (34.11%), Postives = 68/129 (52.71%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 370
            E+W+    L   R+ AR LL     +  R  EG      E +L ++ RYG ++ S   +D +L+L  EN LERRLQT V + G+A+++  AR  I   HI +  +   +P  +V  + + HI +  TSP
Sbjct:   40 EVWKAASTLRMYRSEARRLLASAANSQERGLEGHQKTQSEEILAKLIRYGIIK-SDADIDDILSLKTENILERRLQTQVLRLGLARTVVQARQFITHGHIAINGRKATVPGMLVSKEDEMHIGYYATSP 167          
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_CALMQ (30S ribosomal protein S4P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.656e-13
Identity = 52/125 (41.60%), Postives = 70/125 (56.00%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLR---RMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 367
            ELW  +  L  I++ AR++L+     P  I  GEA  R   R+ R G + +    LD VLAL V   LERRLQTLV++ GMA+SIH AR LI   HI +    V  P ++V  + +  I F+ TS
Sbjct:   42 ELWLARALLRSIKHRAREILSA----PMEI-RGEAEKRLKDRLFRMGLISDINIPLDSVLALDVTAVLERRLQTLVYRKGMARSIHEARQLIVHGHISINGVRVRSPGYLVPRNLEDGIGFAPTS 161          
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_METHJ (30S ribosomal protein S4P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.162e-13
Identity = 46/126 (36.51%), Postives = 71/126 (56.35%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 370
            E+W  + AL + R AAR+++ L     +  R   + + L+  + R G L E+ + +D VLAL VE  L+RRLQT V++ G A+S   AR  I   HI +G + V IP + V    Q+ I ++ +SP
Sbjct:   40 EVWIAKGALRKYRKAAREIIALQSTGSEQARVERKKDELIGSLQRSGMLSENAD-IDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHIAIGGRRVTIPGYTVSAKEQEEISYAGSSP 164          
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_PYRAR (30S ribosomal protein S4P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.824e-13
Identity = 44/110 (40.00%), Postives = 64/110 (58.18%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 325
            ELW  +  L  I   AR LL  T +E+ P  +        ++++ GF+E+    LD +L+L V   LERRLQT+V++ G+AKSI+HAR LI   HI +  + V  P F+V
Sbjct:   42 ELWLARARLKWITRRARSLLSMTAEERAPLEM----PFKEKLYKAGFIEDPNVPLDRILSLDVRAILERRLQTIVYRMGLAKSIYHARQLIVHGHIAIEGRRVTSPGFLV 147          
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_META3 (30S ribosomal protein S4P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.824e-13
Identity = 44/123 (35.77%), Postives = 67/123 (54.47%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 370
            E+W+++  L   R  AR L++       +  E   L   ++RYG L +    LD VL+L +E+ LERRLQTLVF+ G+A +   AR  I   HI V  + +N PS++V +  +  I +   SP
Sbjct:   40 EIWKMETRLRTFRRQARKLISDTSAQGEK--EAVQLFGILNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQARQFIVHGHIAVNGKKINAPSYLVPLVEEDAISYMPNSP 160          
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_METPE (30S ribosomal protein S4P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps4p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.688e-13
Identity = 49/139 (35.25%), Postives = 75/139 (53.96%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTLDEKNPRR---IFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 409
            E+WR Q  L R R AAR+LL    ++        + E LL  ++R G L    +  D VL+L ++  LERRLQT+V++ G+A+S   AR ++   HI +  + V+IPS+ V  D +  I +  TSP        ++R N
Sbjct:   40 EVWRAQSVLRRYRKAARELLAFMSQSSDEQQIATKKEHLLGHLNRIGLLGPDADIGD-VLSLKIQQPLERRLQTMVYRQGLARSPKQARQMVTHGHIAIAGRRVDIPSYRVPRDQETLISYYGTSPLTSEGHPEIERIN 177          
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_HALSA (30S ribosomal protein S4P OS=Halobacterium salinarium GN=rps4p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.291e-13
Identity = 46/122 (37.70%), Postives = 63/122 (51.64%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 367
            ELWR Q  L   R  AR LL            GE  + R+ R G L E + +LD VL+L V + LERRLQT+V++ G+A ++  AR  +   H+ V    V  PS+ V V  +  + F  TS
Sbjct:   40 ELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRVTEPSYTVPVSEENTLAFDETS 155          
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_HALS3 (30S ribosomal protein S4P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.291e-13
Identity = 46/122 (37.70%), Postives = 63/122 (51.64%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 367
            ELWR Q  L   R  AR LL            GE  + R+ R G L E + +LD VL+L V + LERRLQT+V++ G+A ++  AR  +   H+ V    V  PS+ V V  +  + F  TS
Sbjct:   40 ELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRVTEPSYTVPVSEENTLAFDETS 155          
The following BLAST results are available for this feature:
BLAST of CK740162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS4_THENV9.706e-1441.8230S ribosomal protein S4P OS=Thermoproteus neutrop... [more]
RS4_PYRIL1.268e-1337.2930S ribosomal protein S4P OS=Pyrobaculum islandicu... [more]
RS4_METBF1.656e-1334.1130S ribosomal protein S4P OS=Methanosarcina barker... [more]
RS4_CALMQ1.656e-1341.6030S ribosomal protein S4P OS=Caldivirga maquilinge... [more]
RS4_METHJ2.162e-1336.5130S ribosomal protein S4P OS=Methanospirillum hung... [more]
RS4_PYRAR2.824e-1340.0030S ribosomal protein S4P OS=Pyrobaculum arsenatic... [more]
RS4_META32.824e-1335.7730S ribosomal protein S4P OS=Methanococcus aeolicu... [more]
RS4_METPE3.688e-1335.2530S ribosomal protein S4P OS=Methanosphaerula palu... [more]
RS4_HALSA6.291e-1337.7030S ribosomal protein S4P OS=Halobacterium salinar... [more]
RS4_HALS36.291e-1337.7030S ribosomal protein S4P OS=Halobacterium salinar... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6656 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740162 ID=CK740162; Name=CK740162; organism=Citrus sinensis; type=EST; length=519bp
GGAACTCTGGAGGGTTCAATATGCACTGAGCCGCATCCGAAATGCTGCGA
GGGATCTTCTCACTCTCGATGAGAAGAACCCACGTCGTATTTTCGAGGGT
GAGGCTCTTCTCAGGAGGATGCACAGGTACGGCTTCTTGGAAGAGAGCCA
GAACAAGCTTGATTATGTGTTGGCCCTCACTGTGGAGAACTTTCTTGAGC
GTCGTCTCCAGACCCTTGTGTTCAAGAGTGGCATGGCTAAGTCAATTCAC
CATGCTCGAGTGCTCATCAGGCAGAGGCACATTAGGGTTGGAAGGCAGCT
TGTCAACATTCCCTCATTTGTAGTGAGGGTTGATTCCCAGAAGCACATTG
AATTCTCACTGACAAGTCCATTCGGAGGTGGCCGCCCTGGAAGAGTGAAG
AGAAGGAACATCAAGGCTGCTGCCAAGAAGGCCGCAGGTGGAGATGGAGA
TGAAGAGGATGAAGAATAAATTACCTGTGTGAACAGATAGTTTTTTTATG
GGTACAGTAGGAATTCTGG
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