CK740162

Overview
NameCK740162
Unique NameCK740162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length519
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_METTH (30S ribosomal protein S4P OS=Methanobacterium thermoautotrophicum GN=rps4p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.217e-13
Identity = 45/123 (36.59%), Postives = 71/123 (57.72%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 370
            E+W+ +  + R R  AR LL +  ++  +  E E LL  + R G L E   KL+ VL LTVE+ L RRLQTLV K G+A+++  AR ++   HI +  + ++ P ++V+   +  I F  +SP
Sbjct:   40 EVWKAETMVRRYRRDARYLLGMASEHTGK--EREQLLGHLVRTGILNEGA-KLEDVLDLTVEDVLRRRLQTLVHKRGLARTVKEARQMVIHGHIALDGRKIDAPGYIVKRGEEDKIGFYPSSP 159          
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_NATPD (30S ribosomal protein S4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.073e-12
Identity = 46/124 (37.10%), Postives = 66/124 (53.23%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTLDEKNPRRIFE-GEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 370
            ELWR Q  L   R  AR L+   + +     E G   L R+ R G L++ ++ LD +L+L V + LERRLQT+ ++ G+  +   AR  I   H+ V    V+ PS+ V V  +  IEF  TSP
Sbjct:   39 ELWRAQSELRDYRREARRLIGEAQGDTVAAAEAGSEFLARLKRIGVLDD-EDSLDDILSLDVTDILERRLQTVAYRKGLGNTPQQARQFIAHGHVTVNGARVSAPSYKVDVAEEGEIEFDETSP 161          
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_NITMS (30S ribosomal protein S4P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.830e-12
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFS 358
            ELW+    LSR+R+ AR LL L ++   R  +   L++ + R G L  S   LD VL LT  + L RRLQT+V K    K+ + AR  +   HI +G + V+IPS+ V V+ +  I F+
Sbjct:   40 ELWKAHTELSRVRHQARSLLALRQEV--RAEKEPILMKSLARIG-LVSSDATLDDVLNLTANDLLSRRLQTIVTKKLGFKTPYQARQAVIHGHIMIGERKVDIPSYTVTVEEENSIHFA 155          
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_NANEQ (30S ribosomal protein S4P OS=Nanoarchaeum equitans GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.326e-12
Identity = 45/123 (36.59%), Postives = 68/123 (55.28%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 370
            ELW  +    + R  AR L            E E  L ++ + G L E+  +LD VL LTV++ LERRLQT++ + G+AK++  AR  I   HI V  ++V+ PS++V+ + +  IEF   SP
Sbjct:   37 ELWIAETIARKWRAYARYLNAKQAAGQDISEEKERFLTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVNGEVVDAPSYLVKKEEEDKIEFVPFSP 158          
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_METAC (30S ribosomal protein S4P OS=Methanosarcina acetivorans GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.326e-12
Identity = 43/129 (33.33%), Postives = 65/129 (50.39%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 370
            E+W+    L   R+ AR LL           EG      E +L ++ RYG ++   N +D +L+L  EN LERRLQT V + G+A+++  AR  I   HI +  +   IP  +V  + + HI +   SP
Sbjct:   40 EVWKAASMLRMYRSEARKLLAHVASGQEGGLEGHYRTQSEEILSKLIRYGIIKSDAN-IDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEMHIGYYGNSP 167          
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_CENSY (30S ribosomal protein S4P OS=Cenarchaeum symbiosum GN=rps4p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.186e-11
Identity = 46/124 (37.10%), Postives = 68/124 (54.84%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 373
            ELW+    LSR+RN AR LL L ++   R  +   LLR + R G + +  + LD VL L V + L RRLQT+V K     + + AR  +   HI +  ++V IPS+ V V+ +  I+ +  S F
Sbjct:   40 ELWKAHTELSRVRNQARSLLALGQEVRER--KEPVLLRSLARIGLVGKDAS-LDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQARQAVVHGHITISDRVVTIPSYTVYVEEEGDIKLTGGSAF 160          
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_METMA (30S ribosomal protein S4P OS=Methanosarcina mazei GN=rps4p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.550e-11
Identity = 42/130 (32.31%), Postives = 66/130 (50.77%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTL-------DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 370
            E+W+    L   R+ AR LL          E       + E +L ++ RYG ++   N +D +L+L  EN LERRLQT V + G+A+++  AR  I   HI +  +   IP  +V  + + HI +  +SP
Sbjct:   40 EVWKAASMLRMYRSEARKLLAQVASGGQEGELEGHYATQSEEILSKLIRYGIIKADAN-VDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEMHIGYYGSSP 168          
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_METMJ (30S ribosomal protein S4P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.024e-11
Identity = 46/126 (36.51%), Postives = 67/126 (53.17%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 370
            ELW+ Q  L + R  AR+L+ L          + + + L+  ++RYG + E+ +  D VLAL VE  L+RRLQTLV + G A+S   AR  I   HI +  + V IP +  RV+  +  E S   P
Sbjct:   40 ELWKAQSVLRKYRAGARELVALRSGGLSTEDYLKKRDQLVNHLYRYGLVGENADVGD-VLALKVEQQLDRRLQTLVLRRGFARSPKQARQFITHGHIAIKGRRVTIPGY--RVERAEEAEISYYGP 162          
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_METBU (30S ribosomal protein S4P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps4p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.643e-11
Identity = 43/126 (34.13%), Postives = 65/126 (51.59%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTLDEKNP---RRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 370
            ELW+    L R R  AR LL    ++        E + LL ++ R+  L+   N +D VL L  E  LERRLQT V + G+A++   AR  I   HI +  + V +P  +V  + + ++E+  TSP
Sbjct:   40 ELWKSLSVLRRFRGDARRLLAESAESDLIGHSKTEADQLLTKLIRFSILKSDSN-IDDVLGLQTEAILERRLQTQVHRLGLARTARQARQFITHGHIAIDGKRVTVPGMMVTREQEMNVEYYGTSP 164          
BLAST of CK740162 vs. ExPASy Swiss-Prot
Match: RS4_METS3 (30S ribosomal protein S4P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.452e-11
Identity = 45/123 (36.59%), Postives = 65/123 (52.85%), Query Frame = 2
Query:    2 ELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 370
            E+W+    + R    AR LL  D    +   E   LL  + R G L E    L+ VL LTVE+ L RRLQT+V+K G+A++   AR+ +   HI +  + +N PS+VV    +  I F  +SP
Sbjct:   40 EIWKADTLVRRYSREARYLLGFDMDQMQD--EKLELLGHLARTGVLPEGA-ALEEVLNLTVEDILRRRLQTIVYKKGLARTPKEARMFVVHGHITLNGKKINSPSYVVLKGQEDEIGFYPSSP 159          
The following BLAST results are available for this feature:
BLAST of CK740162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS4_METTH8.217e-1336.5930S ribosomal protein S4P OS=Methanobacterium ther... [more]
RS4_NATPD1.073e-1237.1030S ribosomal protein S4P OS=Natronomonas pharaoni... [more]
RS4_NITMS1.830e-1238.6630S ribosomal protein S4P OS=Nitrosopumilus mariti... [more]
RS4_NANEQ5.326e-1236.5930S ribosomal protein S4P OS=Nanoarchaeum equitans... [more]
RS4_METAC5.326e-1233.3330S ribosomal protein S4P OS=Methanosarcina acetiv... [more]
RS4_CENSY1.186e-1137.1030S ribosomal protein S4P OS=Cenarchaeum symbiosum... [more]
RS4_METMA1.550e-1132.3130S ribosomal protein S4P OS=Methanosarcina mazei ... [more]
RS4_METMJ2.024e-1136.5130S ribosomal protein S4P OS=Methanoculleus marisn... [more]
RS4_METBU2.643e-1134.1330S ribosomal protein S4P OS=Methanococcoides burt... [more]
RS4_METS33.452e-1136.5930S ribosomal protein S4P OS=Methanobrevibacter sm... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6656 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740162 ID=CK740162; Name=CK740162; organism=Citrus sinensis; type=EST; length=519bp
GGAACTCTGGAGGGTTCAATATGCACTGAGCCGCATCCGAAATGCTGCGA
GGGATCTTCTCACTCTCGATGAGAAGAACCCACGTCGTATTTTCGAGGGT
GAGGCTCTTCTCAGGAGGATGCACAGGTACGGCTTCTTGGAAGAGAGCCA
GAACAAGCTTGATTATGTGTTGGCCCTCACTGTGGAGAACTTTCTTGAGC
GTCGTCTCCAGACCCTTGTGTTCAAGAGTGGCATGGCTAAGTCAATTCAC
CATGCTCGAGTGCTCATCAGGCAGAGGCACATTAGGGTTGGAAGGCAGCT
TGTCAACATTCCCTCATTTGTAGTGAGGGTTGATTCCCAGAAGCACATTG
AATTCTCACTGACAAGTCCATTCGGAGGTGGCCGCCCTGGAAGAGTGAAG
AGAAGGAACATCAAGGCTGCTGCCAAGAAGGCCGCAGGTGGAGATGGAGA
TGAAGAGGATGAAGAATAAATTACCTGTGTGAACAGATAGTTTTTTTATG
GGTACAGTAGGAATTCTGG
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