CK740163

Overview
NameCK740163
Unique NameCK740163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length453
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740163 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.208e-12
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 2
Query:    5 LAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVR 166
            L G  ++GA MNPARSF PA+++ ++T+HWVYWVGP+IGGGL   +Y+     R
Sbjct:  173 LFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPIIGGGLGSLLYDFLLFPR 226          
BLAST of CK740163 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.208e-12
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 2
Query:    5 LAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVR 166
            L G  ++GA MNPARSF PA+++ ++T+HWVYWVGP+IGGGL   +Y+     R
Sbjct:  173 LFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPIIGGGLGSLLYDFLLFPR 226          
BLAST of CK740163 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.766e-12
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 2
Query:    5 LAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYE 148
            L G PF+GA MNPARSF PA+++ ++T+HWV+W GPL+G  LA  +YE
Sbjct:  173 LFGIPFTGAGMNPARSFAPAVITRNFTNHWVFWAGPLLGAALAALLYE 220          
BLAST of CK740163 vs. ExPASy Swiss-Prot
Match: AQP_CICVR (Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.766e-12
Identity = 36/66 (54.55%), Postives = 44/66 (66.67%), Query Frame = 2
Query:    5 LAGGPFSGASMNPARSFGPALVSGD--WTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPIPYEEA 196
            LA   ++G+SMNPARSFGPA V+GD  W +HWVYW GP++GG +AG  Y   F  R     P EEA
Sbjct:  190 LAAIKYTGSSMNPARSFGPA-VNGDDNWANHWVYWAGPIVGGVVAGITYRALFRARK----PEEEA 250          
BLAST of CK740163 vs. ExPASy Swiss-Prot
Match: AQP8_RAT (Aquaporin-8 OS=Rattus norvegicus GN=Aqp8 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.766e-12
Identity = 29/51 (56.86%), Postives = 37/51 (72.55%), Query Frame = 2
Query:    2 ILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHF 154
            ILAGG  SGA MNPAR+FGPA+++G W  HW+YW+GPL+ G   G +   F
Sbjct:  200 ILAGGGISGACMNPARAFGPAVMAGYWDFHWIYWLGPLLAGLFVGLLIRLF 250          
BLAST of CK740163 vs. ExPASy Swiss-Prot
Match: AQP8_MOUSE (Aquaporin-8 OS=Mus musculus GN=Aqp8 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.918e-12
Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 2
Query:    2 ILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFI 142
            ILAGG  SGA MNPAR+FGPA+++G W  HW+YW+GPL+ G   G +
Sbjct:  198 ILAGGSISGACMNPARAFGPAVMAGYWDFHWIYWLGPLLAGLFVGLL 244          
BLAST of CK740163 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 6.423e-12
Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = 2
Query:    5 LAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVR 166
            L G  ++GA MNPARSF PA+++ ++++HWVYWVGP+IGGGL   +Y+     R
Sbjct:  171 LFGMYYTGAGMNPARSFAPAILTRNFSNHWVYWVGPIIGGGLGSLLYDFLLFPR 224          
BLAST of CK740163 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 6.423e-12
Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = 2
Query:    5 LAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVR 166
            L G  ++GA MNPARSF PA+++ ++++HWVYWVGP+IGGGL   +Y+     R
Sbjct:  173 LFGMYYTGAGMNPARSFAPAILTRNFSNHWVYWVGPIIGGGLGSLLYDFLLFPR 226          
BLAST of CK740163 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.431e-11
Identity = 28/54 (51.85%), Postives = 39/54 (72.22%), Query Frame = 2
Query:    5 LAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVR 166
            L G  ++GA MNPARSF PA+++ ++T+HWVYWVGP+IG GL   +Y+     R
Sbjct:  173 LFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR 226          
BLAST of CK740163 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.431e-11
Identity = 28/54 (51.85%), Postives = 39/54 (72.22%), Query Frame = 2
Query:    5 LAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVR 166
            L G  ++GA MNPARSF PA+++ ++T+HWVYWVGP+IG GL   +Y+     R
Sbjct:  173 LFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR 226          
The following BLAST results are available for this feature:
BLAST of CK740163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
MIP_CAVPO2.208e-1253.70Lens fiber major intrinsic protein OS=Cavia porcel... [more]
MIP_CANFA2.208e-1253.70Lens fiber major intrinsic protein OS=Canis famili... [more]
MIP_CHICK3.766e-1258.33Lens fiber major intrinsic protein OS=Gallus gallu... [more]
AQP_CICVR3.766e-1254.55Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 ... [more]
AQP8_RAT3.766e-1256.86Aquaporin-8 OS=Rattus norvegicus GN=Aqp8 PE=2 SV=1[more]
AQP8_MOUSE4.918e-1259.57Aquaporin-8 OS=Mus musculus GN=Aqp8 PE=2 SV=1[more]
MIP_RAT6.423e-1251.85Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_MOUSE6.423e-1251.85Lens fiber major intrinsic protein OS=Mus musculus... [more]
MIP_SHEEP1.431e-1151.85Lens fiber major intrinsic protein OS=Ovis aries G... [more]
MIP_BOVIN1.431e-1151.85Lens fiber major intrinsic protein OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6657 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740163 ID=CK740163; Name=CK740163; organism=Citrus sinensis; type=EST; length=453bp
CATCTTGGCTGGTGGACCTTTCTCCGGCGCCTCAATGAACCCGGCACGAT
CCTTCGGACCGGCTTTGGTCAGCGGAGACTGGACCGATCATTGGGTTTAC
TGGGTTGGGCCTCTCATTGGAGGTGGGCTTGCTGGGTTCATTTATGAACA
TTTCTTCATCGTCAGGTCTCATGTTCCCATTCCGTACGAGGAAGCCAGAT
TTTAATTAACTAACCGAATCCAATGGCGTGATGGACCACGGTGTTATCTG
TGGGTCACTATTTTGTTAAATTAAGTGAATGATGTACCACGTGTGTCTTA
TGTGTATGAATACTGTAATATTACAAGCTGCTGTTTCTCTCTTGATGTAC
TTTTAGTCTCGGTGCAGGTCTTGTTAATTGATCCGAGAACTTTTTTGGCT
GCTGTCATTTTGGCTGCTCTGTTCTAATTTTGTGATTAAAAAAAAAAAAA
AAA
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