CK740163

Overview
NameCK740163
Unique NameCK740163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length453
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740163 vs. ExPASy Swiss-Prot
Match: AQP6_HUMAN (Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.869e-11
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 2
Query:    5 LAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIY 145
            L G  F+G SMNPARSFGPA++ G +T HWV+WVGPL+G  LA  IY
Sbjct:  185 LIGIHFTGCSMNPARSFGPAIIIGKFTVHWVFWVGPLMGALLASLIY 231          
BLAST of CK740163 vs. ExPASy Swiss-Prot
Match: TIP51_ARATH (Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.188e-11
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 2
Query:    2 ILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPIPYEEAR 199
            +LA GPFSG SMNPA +FG A+V G + +  VYWVGPL+GG  A  +Y+       +V +P E+ R
Sbjct:  188 VLAAGPFSGGSMNPACAFGSAMVYGSFKNQAVYWVGPLLGGATAALVYD-------NVVVPVEDDR 246          
BLAST of CK740163 vs. ExPASy Swiss-Prot
Match: AQPA_DICDI (Aquaporin A OS=Dictyostelium discoideum GN=aqpA PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.437e-11
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 2
Query:    2 ILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIY 145
            +  G  FSG ++NP R  GP+++SG W+ HWVYW+GP++G  LA FIY
Sbjct:  202 VAIGFNFSGGALNPVRVLGPSIISGVWSHHWVYWLGPIVGAILAAFIY 249          
BLAST of CK740163 vs. ExPASy Swiss-Prot
Match: TIP51_MAIZE (Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.102e-11
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 2
Query:    2 ILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYE 148
            +LA G  +GASMNPARSFGPA+VSG + +  VYW GP++G  +A  +Y+
Sbjct:  196 VLAAGALTGASMNPARSFGPAVVSGHFKNQAVYWAGPMVGAAVAALVYQ 244          
BLAST of CK740163 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 9.275e-11
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 2
Query:    2 ILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPIP 184
            +LA G  +GASMNPARSFGPA+VSG +++  VYW GP++G  +A  +  H  +V   VP P
Sbjct:  191 VLAAGSLTGASMNPARSFGPAVVSGHYSNQAVYWAGPMVGAAVAALV--HQALVFPTVPEP 249          
The following BLAST results are available for this feature:
BLAST of CK740163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
AQP6_HUMAN1.869e-1163.83Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2[more]
TIP51_ARATH3.188e-1148.48Probable aquaporin TIP5-1 OS=Arabidopsis thaliana ... [more]
AQPA_DICDI5.437e-1152.08Aquaporin A OS=Dictyostelium discoideum GN=aqpA PE... [more]
TIP51_MAIZE7.102e-1155.10Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1[more]
TIP51_ORYSJ9.275e-1150.82Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6657 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740163 ID=CK740163; Name=CK740163; organism=Citrus sinensis; type=EST; length=453bp
CATCTTGGCTGGTGGACCTTTCTCCGGCGCCTCAATGAACCCGGCACGAT
CCTTCGGACCGGCTTTGGTCAGCGGAGACTGGACCGATCATTGGGTTTAC
TGGGTTGGGCCTCTCATTGGAGGTGGGCTTGCTGGGTTCATTTATGAACA
TTTCTTCATCGTCAGGTCTCATGTTCCCATTCCGTACGAGGAAGCCAGAT
TTTAATTAACTAACCGAATCCAATGGCGTGATGGACCACGGTGTTATCTG
TGGGTCACTATTTTGTTAAATTAAGTGAATGATGTACCACGTGTGTCTTA
TGTGTATGAATACTGTAATATTACAAGCTGCTGTTTCTCTCTTGATGTAC
TTTTAGTCTCGGTGCAGGTCTTGTTAATTGATCCGAGAACTTTTTTGGCT
GCTGTCATTTTGGCTGCTCTGTTCTAATTTTGTGATTAAAAAAAAAAAAA
AAA
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