CK740164

Overview
NameCK740164
Unique NameCK740164
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740164 vs. ExPASy Swiss-Prot
Match: HS186_ORYSJ (18.6 kDa class III heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.6 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.645e-20
Identity = 54/118 (45.76%), Postives = 78/118 (66.10%), Query Frame = 2
Query:  212 PADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVV-------SGERKRDPKEKDNKDGVKYVRMERRFGK--FMRKFVLPDNANVEKISALCQDGVLIVTVEKVPPPQPKTIQVQV 538
            P D++E P  Y FV+D+PG+  S+I+V +E + VLV+       +G+RKR+ +E +     KY+R+ERR     F RKF LP++A+   ISA C++GVL VTV+K PPP+ KT  VQV
Sbjct:   56 PVDIMETPGEYAFVLDVPGLSKSDIQVTLEEDRVLVMKSSNGAGNGKRKREEEEGE----CKYIRLERRASPRAFARKFRLPEDADTGGISARCENGVLTVTVKKRPPPEKKTKSVQV 169          
BLAST of CK740164 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.645e-20
Identity = 53/135 (39.26%), Postives = 81/135 (60.00%), Query Frame = 2
Query:  137 PEEQENTRNNPSRAYVRDAKAMAATPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISALCQDGVLIVTVEKVPPPQPKTIQVQVA 541
            P E   T +  + A   D  A      D  E P ++VF  D+PG++  E+KV+VE  N+L +SGER  + +EK++    K+ R+ER  GKF R+F LP+NA +E+I A  ++GVL VTV KVP  +P+   + ++
Sbjct:   26 PFEGFLTPSGLANAPAMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKND----KWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDIS 156          
BLAST of CK740164 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.645e-20
Identity = 52/117 (44.44%), Postives = 74/117 (63.25%), Query Frame = 2
Query:  188 DAKAMAATPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISALCQDGVLIVTVEKVPPPQPKTIQVQV 538
            DA A A    D  E P ++VF  D+PG+K  E+KV+VE  NVL +SGER ++ +EK +    K+ R+ER  GKF+R+F LP+N   E+I A  ++GVL VTV K  P +P    +Q+
Sbjct:   40 DAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTD----KWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQI 152          
BLAST of CK740164 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.454e-20
Identity = 50/123 (40.65%), Postives = 82/123 (66.67%), Query Frame = 2
Query:  170 SRAYVRDAKAMAATPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISALCQDGVLIVTV--EKVPPPQPKTIQV 532
            S ++ R+  A  +T  D  E P ++VF  D+PG+K  E+KV++E + VL +SGER  + ++K++    ++ R+ER  GKFMR+F LP+NA ++++ A  ++GVL VTV  E+V  P+ KTI +
Sbjct:   38 SASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKND----QWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDI 156          
BLAST of CK740164 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.454e-20
Identity = 52/117 (44.44%), Postives = 78/117 (66.67%), Query Frame = 2
Query:  188 DAKAMAATPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISALCQDGVLIVTVEK--VPPPQPKTIQV 532
            D  A A    D  E P S+VF  D+PG+K  E+KV+VE  NVLV+SG+R ++ ++K++    K+ R+ER  G+FMR+F LP+NA V+++ A  ++GVL VTV K  V  P+ K I++
Sbjct:   36 DTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKND----KWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEI 148          
BLAST of CK740164 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.454e-20
Identity = 52/117 (44.44%), Postives = 78/117 (66.67%), Query Frame = 2
Query:  188 DAKAMAATPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISALCQDGVLIVTVEK--VPPPQPKTIQV 532
            D  A A    D  E P S+VF  D+PG+K  E+KV+VE  NVLV+SG+R ++ ++K++    K+ R+ER  G+FMR+F LP+NA V+++ A  ++GVL VTV K  V  P+ K I++
Sbjct:   36 DTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKND----KWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEI 148          
BLAST of CK740164 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.512e-20
Identity = 49/128 (38.28%), Postives = 86/128 (67.19%), Query Frame = 2
Query:  155 TRNNPSRAYVRDAKAMAATPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISALCQDGVLIVTV--EKVPPPQPKTIQV 532
            + ++PS ++ R+  A  +T  D  E P ++VF  D+PG+K  E+KV+VE + VL +SGER  + ++K++    ++ R+ER  GKF+R+F LP+NA ++K+ A  ++GVL VTV  E++   + K+I++
Sbjct:   33 SNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKND----EWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEI 156          
BLAST of CK740164 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 7.696e-20
Identity = 51/124 (41.13%), Postives = 76/124 (61.29%), Query Frame = 2
Query:  170 SRAYVRDAKAMAATPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISALCQDGVLIVTVEKVPPPQPKTIQVQVA 541
            + A  +D  A      D  E P ++VF  D+PG+K  E+KV+VE  N+L +SGER  + +EK +     + R+ER  GKFMR+F LP+NA VE++ A  ++GVL VTV KV   +P+   V ++
Sbjct:   36 TNAPAKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDT----WHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDIS 155          
BLAST of CK740164 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.696e-20
Identity = 51/117 (43.59%), Postives = 73/117 (62.39%), Query Frame = 2
Query:  188 DAKAMAATPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISALCQDGVLIVTVEKVPPPQPKTIQVQV 538
            +  A A    D  E P ++VF  D+PG+K  E+KV+VE  NVL +SGER ++ +EK +    K+ R+ER  GKF+R+F LP+N   E+I A  ++GVL VTV K  P +P    +QV
Sbjct:   47 ETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTD----KWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQV 159          
BLAST of CK740164 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.005e-19
Identity = 51/120 (42.50%), Postives = 78/120 (65.00%), Query Frame = 2
Query:  179 YVRDAKAMAATPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISALCQDGVLIVTV--EKVPPPQPKTIQV 532
            + R+  A  +T  D  E P ++VF  D+PG+K  E+KVQ+E + VL +SGER  + ++K++     + R+ER  GKFMR+F LP+NA VE++ A  ++GVL VTV  E+V  P  K I++
Sbjct:   44 FSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKND----TWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEI 159          
The following BLAST results are available for this feature:
BLAST of CK740164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HS186_ORYSJ2.645e-2045.7618.6 kDa class III heat shock protein OS=Oryza sat... [more]
HS17C_ARATH2.645e-2039.2617.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HS174_ORYSJ2.645e-2044.4417.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP12_MEDSA3.454e-2040.6518.2 kDa class I heat shock protein OS=Medicago sa... [more]
HS16B_ORYSJ3.454e-2044.4416.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS16A_ORYSJ3.454e-2044.4416.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HSP11_PEA4.512e-2038.2818.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP17_ARATH7.696e-2041.1317.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HS181_ORYSJ7.696e-2043.5918.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP16_SOYBN1.005e-1942.5018.5 kDa class I heat shock protein OS=Glycine max... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6658 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740164 ID=CK740164; Name=CK740164; organism=Citrus sinensis; type=EST; length=612bp
CAAACACAAAATCGCACTAGCATAGCTAAAGCTCTCGCATATATATAAAA
AAAGAGAAGAATACAACATGGATCTAAGAAGCCTAGCAGGTTTCGATTCA
CCATTCTTCTCAATCCTCGAAGACGTGCTGGAGCTGCCTGAAGAACAAGA
AAATACCCGAAACAACCCGTCAAGAGCCTACGTTCGGGATGCCAAAGCCA
TGGCGGCAACACCAGCAGATGTGGTGGAGTATCCGAATTCATACGTGTTC
GTTGTGGACATGCCAGGGATTAAGGCCAGCGAGATCAAGGTCCAAGTTGA
GAGCGAAAACGTGCTCGTGGTCAGCGGAGAGCGGAAACGGGATCCCAAGG
AGAAAGATAACAAAGATGGTGTTAAGTACGTGAGAATGGAGAGGAGGTTT
GGCAAGTTTATGAGGAAGTTCGTGCTGCCTGACAATGCTAATGTGGAAAA
GATATCTGCGTTGTGTCAGGACGGTGTTTTGATAGTCACTGTCGAGAAAG
TGCCCCCACCGCAGCCAAAGACCATTCAGGTTCAAGTTGCCTGAGACATT
TTAATTTGGGTGTGTTTGTGACTCAATTATCAATCTGACTATCTGAGTGT
CGTGATGTTTGT
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