CK740164

Overview
NameCK740164
Unique NameCK740164
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740164 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.832e-14
Identity = 40/111 (36.04%), Postives = 66/111 (59.46%), Query Frame = 2
Query:  188 DAKAMAATPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISALCQDGVLIVTVEKVPPPQPK 520
            D   ++    D  E  +++  VVD+PG++  +++V+VE   VL +SGER+R+   +    G  + R ER +G+F R+  LPDNA+++ I+A   +GVL V   K+ P Q K
Sbjct:   69 DVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTVRFRKLAPDQIK 179          
BLAST of CK740164 vs. ExPASy Swiss-Prot
Match: HS22C_CHLRE (Heat shock 22 kDa protein, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.398e-13
Identity = 46/110 (41.82%), Postives = 64/110 (58.18%), Query Frame = 2
Query:  212 PADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISALCQDGVLIVTVEKVPP---PQPKTIQV 532
            P D++E P ++    D PG+   ++KV+++ E VL+V+GERK     K+   G K  R ER    F R F LP+NAN + I+A    GVL+VTV K  P   P+PK I V
Sbjct:   48 PMDIIESPTAFELHADAPGMGPDDVKVELQ-EGVLMVTGERKLSHTTKEA--GGKVWRSERTAYSFSRAFSLPENANPDGITAAMDKGVLVVTVPKREPPAKPEPKRIAV 154          
BLAST of CK740164 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.090e-13
Identity = 42/107 (39.25%), Postives = 64/107 (59.81%), Query Frame = 2
Query:  191 AKAMAATPA----DVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISALCQDGVLIVTVEK 499
            A A A  P+    D  E   ++VF+ DMPG++  E++V+VE E VL +SG+R R  +EK    G ++ R+ER   +F+R   LP NAN + + A   +GVL +T+ K
Sbjct:   60 AAAAAGVPSTASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEK----GERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLTITIPK 162          
BLAST of CK740164 vs. ExPASy Swiss-Prot
Match: SP21_STIAU (Spore protein SP21 OS=Stigmatella aurantiaca GN=hspA PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.522e-12
Identity = 41/111 (36.94%), Postives = 65/111 (58.56%), Query Frame = 2
Query:  203 AATPA-DVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISALCQDGVLIVTVEKVPPPQPKTIQV 532
            A  PA +V E   +Y+F  D+PG+   +I+V +  + V V SG+R+R+ +E+  +    +   ER FG F R F LP+  + + + A  ++GVL +T+ K P  QPK IQV
Sbjct:   51 AFVPAFEVRETKEAYIFKADLPGVDEKDIEVTLTGDRVSV-SGKREREKREESER----FYAYERTFGSFSRAFTLPEGVDGDNVRADLKNGVLTLTLPKRPEVQPKRIQV 156          
BLAST of CK740164 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.906e-12
Identity = 48/121 (39.67%), Postives = 65/121 (53.72%), Query Frame = 2
Query:  191 AKAMAATPADVVEYPNSYVFVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKD---NKDGVKYVRMERRFGKFMRKFVLPDNANVEKISALCQDGVLIVTVEKVP-PPQPKTIQVQVA 541
            A A A    D VE P S+V  +++PG+   ++KVQVE  NVL V G       EK+    KD V +V  ER   +F R+  LP    VE+I A   +GVL V V K P P +P+T  + V+
Sbjct:   24 ASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKDVVWHV-AERGRPEFAREVALPAEVRVEQIRASVDNGVLTVVVPKEPAPARPRTRPIAVS 143          
BLAST of CK740164 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.530e-11
Identity = 42/106 (39.62%), Postives = 60/106 (56.60%), Query Frame = 2
Query:  188 DAKAMAATPADVVEYPNSYVFVVDMP-GIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVEKISALCQDGVLIVTVEKV 502
            D  A A T  +  E   +YVF  D+P G+K  E++V+V+  NVLV++GER    +EK    G +   +ER    F  +F LPD+A V+ + A    G+L VTV KV
Sbjct:   34 DTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEK----GQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGMLTVTVPKV 135          
The following BLAST results are available for this feature:
BLAST of CK740164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HS232_ORYSJ2.832e-1436.0423.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS22C_CHLRE2.398e-1341.82Heat shock 22 kDa protein, chloroplastic OS=Chlamy... [more]
HS189_ORYSJ4.090e-1339.2518.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
SP21_STIAU4.522e-1236.94Spore protein SP21 OS=Stigmatella aurantiaca GN=hs... [more]
HSP16_ORYSJ5.906e-1239.6716.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HS17B_ORYSJ6.530e-1139.6217.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6658 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740164 ID=CK740164; Name=CK740164; organism=Citrus sinensis; type=EST; length=612bp
CAAACACAAAATCGCACTAGCATAGCTAAAGCTCTCGCATATATATAAAA
AAAGAGAAGAATACAACATGGATCTAAGAAGCCTAGCAGGTTTCGATTCA
CCATTCTTCTCAATCCTCGAAGACGTGCTGGAGCTGCCTGAAGAACAAGA
AAATACCCGAAACAACCCGTCAAGAGCCTACGTTCGGGATGCCAAAGCCA
TGGCGGCAACACCAGCAGATGTGGTGGAGTATCCGAATTCATACGTGTTC
GTTGTGGACATGCCAGGGATTAAGGCCAGCGAGATCAAGGTCCAAGTTGA
GAGCGAAAACGTGCTCGTGGTCAGCGGAGAGCGGAAACGGGATCCCAAGG
AGAAAGATAACAAAGATGGTGTTAAGTACGTGAGAATGGAGAGGAGGTTT
GGCAAGTTTATGAGGAAGTTCGTGCTGCCTGACAATGCTAATGTGGAAAA
GATATCTGCGTTGTGTCAGGACGGTGTTTTGATAGTCACTGTCGAGAAAG
TGCCCCCACCGCAGCCAAAGACCATTCAGGTTCAAGTTGCCTGAGACATT
TTAATTTGGGTGTGTTTGTGACTCAATTATCAATCTGACTATCTGAGTGT
CGTGATGTTTGT
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