CK740171

Overview
NameCK740171
Unique NameCK740171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740171 vs. ExPASy Swiss-Prot
Match: POR_AVESA (Protochlorophyllide reductase (Fragment) OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 1.421e-70
Identity = 127/149 (85.23%), Postives = 139/149 (93.29%), Query Frame = 3
Query:    3 GGLNGLNSSSMIDGGD-FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 446
            GGL G + S+MIDG + FDGAKAYKDSKVCNMLTMQEFHRR+HE+TGI F+SLYPGCIATTGLFREHIPLFR LFPPFQK++TKG+VSE E+GKRLAQVV +PSLTKSGVYWSWNKDSASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct:  165 GGLTGASGSAMIDGDESFDGAKAYKDSKVCNMLTMQEFHRRYHEDTGITFSSLYPGCIATTGLFREHIPLFRTLFPPFQKFVTKGFVSEAESGKRLAQVVGEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 313          
BLAST of CK740171 vs. ExPASy Swiss-Prot
Match: PORA_HORVU (Protochlorophyllide reductase A, chloroplastic OS=Hordeum vulgare GN=PORA PE=1 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 1.855e-70
Identity = 127/149 (85.23%), Postives = 140/149 (93.96%), Query Frame = 3
Query:    3 GGLNGLNSSSMIDGGD-FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 446
            GGL+G + S+MIDG + FDGAKAYKDSKVCNMLTMQEFHRR+HEETGI F+SLYPGCIATTGLFREHIPLFR LFPPFQK++TKG+VSE E+GKRLAQVV++P LTKSGVYWSWNKDSASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct:  240 GGLSGASGSAMIDGDESFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFSSLYPGCIATTGLFREHIPLFRTLFPPFQKFVTKGFVSEAESGKRLAQVVAEPVLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 388          
BLAST of CK740171 vs. ExPASy Swiss-Prot
Match: POR_MARPA (Protochlorophyllide reductase, chloroplastic OS=Marchantia paleacea GN=PORA PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 2.679e-69
Identity = 120/147 (81.63%), Postives = 136/147 (92.52%), Query Frame = 3
Query:    3 GGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGL 443
            GGLNG+NSSSMIDGG+FDGAKAYKDSKVCNM TMQEFHRR+H ETGI F+SLYPGCIA TGLFR H+ LFR LFPPFQKYITKGYVSE+EAGKR+AQVVSDP L+KSGVYWSWNKDS SFEN+LS+EAS+ EKA+++WE+SE+L GL
Sbjct:  311 GGLNGVNSSSMIDGGEFDGAKAYKDSKVCNMFTMQEFHRRYHAETGITFSSLYPGCIAETGLFRNHVTLFRTLFPPFQKYITKGYVSEEEAGKRMAQVVSDPKLSKSGVYWSWNKDSGSFENELSEEASNPEKAKRLWELSERLSGL 457          
BLAST of CK740171 vs. ExPASy Swiss-Prot
Match: POR_CHLRE (Protochlorophyllide reductase, chloroplastic OS=Chlamydomonas reinhardtii GN=PORA PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 8.367e-55
Identity = 99/153 (64.71%), Postives = 125/153 (81.70%), Query Frame = 3
Query:    3 GGLNGLNS-----SSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 446
            G L+GL +     + M+DG +F+GAKAYKDSKV  M+T+++ H+RFH+ TGI FASLYPGCIA TGLFREH+PLF+ LFPPFQKYITKGYVSE+EAG+RLA V+SDP L KSG YWSW+  + SF+NQ+S+E +D  KA K+W+IS KLVGL+
Sbjct:  244 GDLSGLAAGVPAANPMMDGQEFNGAKAYKDSKVACMMTVRQMHQRFHDATGITFASLYPGCIAETGLFREHVPLFKTLFPPFQKYITKGYVSEEEAGRRLAAVISDPKLNKSGAYWSWSSTTGSFDNQVSEEVADDSKASKLWDISAKLVGLS 396          
BLAST of CK740171 vs. ExPASy Swiss-Prot
Match: POR_PLEBO (Light-dependent protochlorophyllide reductase OS=Plectonema boryanum GN=por PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.253e-42
Identity = 84/157 (53.50%), Postives = 113/157 (71.97%), Query Frame = 3
Query:    3 GGLNGLNSS-----SMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW----NKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 446
            G L+GL +      +MIDG  F   KAYKDSK+CNM+T +E HRR+H+ TGI F +LYPGC+A T LFR  +P+F+ +FP FQK IT GYVS++ AG+R AQVV+DP   +SGV+WSW     +   SF  +LS++ +D  KA+++WE+SEKLVGLA
Sbjct:  166 GDLSGLEAGFKAPIAMIDGKPFKAGKAYKDSKLCNMITSRELHRRYHDSTGIVFNTLYPGCVADTPLFRNSLPVFQKVFPWFQKNITGGYVSQELAGERTAQVVADPEFKQSGVHWSWGNRQKEGRESFVQELSEKVTDDAKAKRMWELSEKLVGLA 322          
BLAST of CK740171 vs. ExPASy Swiss-Prot
Match: POR_SYNY3 (Light-dependent protochlorophyllide reductase OS=Synechocystis sp. (strain PCC 6803) GN=por PE=3 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 1.637e-42
Identity = 82/142 (57.75%), Postives = 107/142 (75.35%), Query Frame = 3
Query:   30 SMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW-NKDSA---SFENQLSQEASDVEKARKVWEISEKLVGL 443
            +MI+   F   KAYKDSK+CNMLT +E HRRFH+ETGI F SLYPGC+A T LFR H  LFR +FP FQK +TKGYVS++ AG+R+A VV+D     SGV+WSW N+  A   +F  +LS++ SD +KA+++W++SEKLVGL
Sbjct:  180 AMINNKKFKSGKAYKDSKLCNMLTTRELHRRFHQETGIVFNSLYPGCVADTPLFRNHYSLFRTIFPWFQKNVTKGYVSQELAGERVAMVVADDKFKDSGVHWSWGNRQQAGREAFVQELSEQGSDAQKAQRMWDLSEKLVGL 321          
The following BLAST results are available for this feature:
BLAST of CK740171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
POR_AVESA1.421e-7085.23Protochlorophyllide reductase (Fragment) OS=Avena ... [more]
PORA_HORVU1.855e-7085.23Protochlorophyllide reductase A, chloroplastic OS=... [more]
POR_MARPA2.679e-6981.63Protochlorophyllide reductase, chloroplastic OS=Ma... [more]
POR_CHLRE8.367e-5564.71Protochlorophyllide reductase, chloroplastic OS=Ch... [more]
POR_PLEBO1.253e-4253.50Light-dependent protochlorophyllide reductase OS=P... [more]
POR_SYNY31.637e-4257.75Light-dependent protochlorophyllide reductase OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6666 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740171 ID=CK740171; Name=CK740171; organism=Citrus sinensis; type=EST; length=577bp
CTGGAGGCTTAAATGGGCTAAACAGCTCATCCATGATTGACGGTGGAGAT
TTTGACGGTGCCAAGGCCTACAAGGACAGCAAAGTCTGCAACATGCTTAC
CATGCAAGAGTTTCACAGGCGGTTCCACGAGGAAACTGGCATCGCATTCG
CTTCCCTTTACCCTGGCTGCATTGCCACAACAGGCTTGTTCAGGGAGCAC
ATTCCCTTGTTCAGACTTCTCTTCCCCCCATTCCAAAAGTACATCACCAA
GGGTTATGTCTCTGAAGATGAAGCTGGAAAAAGACTTGCTCAGGTTGTGA
GCGATCCAAGCTTGACAAAATCAGGTGTTTACTGGAGCTGGAACAAGGAC
TCAGCTTCATTTGAGAATCAGTTGTCTCAGGAAGCTAGTGACGTTGAGAA
GGCACGTAAAGTCTGGGAGATAAGTGAGAAACTTGTTGGTTTGGCCTAAT
TCAAAACCTGGAGATTCAGATCTACCAGTTTATGTTATGGGAGGGGTTTA
TGAGCTTGAAGGTTTGTTAGGTAGCGGAGGGGTTTATGAGCTTGAAGGTT
TGTTAGGTAGCGGAGTTTGGAATTGTG
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