CK740172

Overview
NameCK740172
Unique NameCK740172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_METJA (Elongation factor 1-alpha OS=Methanocaldococcus jannaschii GN=tuf PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.755e-49
Identity = 92/181 (50.83%), Postives = 130/181 (71.82%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVERR 545
            VGRVETG+L+PG  V F P+G++ EVKS+EMHHE + +A PGDN+GFNV+ V+ KD+KRG V  +  D+P   A  FT+Q++++ HP  I  GY PV   HT+ +A  F EL+ K+D R+G+ +E+ P+FLK GDA +VK+ PTKPMV+E   + P LGRFA+RDM  T+A G+  +V+ +
Sbjct:  247 VGRVETGILRPGDKVVFEPAGVSGEVKSIEMHHEQIPQAEPGDNIGFNVRGVSKKDIKRGDVCGHP-DNPPTVAEEFTAQIVVLQHPTAITVGYTPVFHAHTAQVACTFIELLKKLDPRTGQVIEENPQFLKTGDAAIVKIKPTKPMVIENVREIPQLGRFAIRDMGMTIAAGMAIDVKAK 426          
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_METTH (Elongation factor 1-alpha OS=Methanobacterium thermoautotrophicum GN=tuf PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.486e-48
Identity = 92/174 (52.87%), Postives = 126/174 (72.41%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 524
            VGRVETGVLK G  V F P+G++ EVKS+EMHHE +++A PGDN+GFNV+ V   D++RG VA +  D+P + A  FT+Q++++ HPG I  GY PV  CHT+ +A  F ELV K++  +G+  E+ P FLK G+A +VK+ PTKP+V+E   D P +GRFA+RDM QTVA G+
Sbjct:  233 VGRVETGVLKKGENVIFEPAGVSGEVKSIEMHHEMIEQAEPGDNIGFNVRGVGKNDIRRGDVAGHL-DNPPKVAKEFTAQIVVLQHPGVITVGYTPVFHCHTAQVACTFLELVQKMNPATGQVEEENPDFLKTGNAAVVKVKPTKPLVIEKIKDIPHMGRFAIRDMGQTVAAGM 405          
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_THESM (Elongation factor 1-alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=tuf PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.941e-48
Identity = 93/188 (49.47%), Postives = 132/188 (70.21%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSG------LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVER 542
            VGRVETGVLK G V+ F P+       +  EVKS+EMHHE++ EALPGDN+GFNV+ V   D+KRG VA ++ + P   R    F +Q+I++NHP  I  GY PVL  HT+ +AV+F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTKPMV+E   + P LGRFA+RDM QTVA G++ ++++
Sbjct:  239 VGRVETGVLKVGDVIIFEPASTIFHKPIQGEVKSIEMHHESMPEALPGDNIGFNVRGVGKNDIKRGDVAGHTTNPPTVVRPRDTFKAQIIVLNHPTAITIGYTPVLHAHTTQVAVRFEQLLAKLDPRTGNVVEENPQFIKTGDSAIVVLRPTKPMVIEPVKELPQLGRFAIRDMGQTVAAGMVISIQK 426          
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_METLZ (Elongation factor 1-alpha OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=tuf PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.535e-48
Identity = 93/181 (51.38%), Postives = 125/181 (69.06%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVERR 545
            VGRVETG+LK G  ++F P+ +T EVKS+EMHHE   EALPGDNVGFNV+ +A  D++RG V    ++ P   A  FT+QV+++ HP  +  GY PV  CHTS  A  F+EL  K+D RSG+  E+ P FLK GDA +  + PT+P+V+ET  + P LGRFAVRDM  TVA G++ +V+ +
Sbjct:  243 VGRVETGILKKGQKISFMPANVTGEVKSIEMHHEEFPEALPGDNVGFNVRGIAKNDVRRGDVCGPIENPPT-VAEEFTAQVVVLQHPSVLSVGYTPVFHCHTSQTACMFTELNKKLDPRSGQVKEENPAFLKAGDAAICTITPTRPLVIETAKELPQLGRFAVRDMGMTVAAGLVLSVKAK 422          
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_HYPBU (Elongation factor 1-alpha OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=tuf PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.535e-48
Identity = 90/179 (50.28%), Postives = 130/179 (72.63%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 539
            VGRVETGVLK G  V F P G+  EV+S+EMHH+ LQ+A PGDN+GFNV+ ++ KD++RG VA +  D P   A  FT+++ ++ HP  I  GY PV+  HT+ IA + +E+  K+D R+G+ +EK P+FLK GDA +VK  P KPMV+E +S++P LGRFA+RDM +T+ +G++ +V+
Sbjct:  253 VGRVETGVLKVGDKVVFMPPGVVGEVRSIEMHHQPLQQAEPGDNIGFNVRGISKKDIRRGDVAGHV-DKPPTVAEEFTARIFVIWHPSAITVGYTPVIHAHTASIAARITEIQAKLDPRTGQVIEKNPQFLKAGDAAIVKFKPIKPMVIEKYSEFPQLGRFAMRDMGKTIGIGIVVDVK 430          
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_THEON (Elongation factor 1-alpha OS=Thermococcus onnurineus (strain NA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.310e-48
Identity = 93/188 (49.47%), Postives = 131/188 (69.68%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSG------LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVER 542
            VGRVETGVL+ G VV F P+       +  EVKS+EMHHE +QEALPGDN+GFNV+ V   D+KRG VA ++ + P   R    F +Q+I++NHP  I  GY PVL  HT  +AV+F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTKPMV+E   + P +GRFA+RDM QTVA G++ ++++
Sbjct:  239 VGRVETGVLRVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPMQEALPGDNIGFNVRGVGKNDIKRGDVAGHTNNPPTVVRPKDTFKAQIIVLNHPTAITIGYTPVLHAHTLQVAVRFEQLLAKLDPRTGNVVEENPQFIKTGDSAIVVLRPTKPMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQK 426          
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_THECE (Elongation factor 1-alpha OS=Thermococcus celer GN=tuf PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.323e-48
Identity = 93/188 (49.47%), Postives = 131/188 (69.68%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSG------LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVER 542
            VGRVETGVL+ G VV F P+       +  EVKS+EMHHE +QEALPGDN+GFNV+ V   D+KRG VA ++ + P   R    F +Q+I++NHP  I  GY PVL  HT  +AV+F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTKPMV+E   + P +GRFA+RDM QTVA G++ ++++
Sbjct:  239 VGRVETGVLRVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPMQEALPGDNIGFNVRGVGKNDIKRGDVAGHTNNPPTVVRPKDTFKAQIIVLNHPTAITVGYTPVLHAHTLQVAVRFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVVLRPTKPMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQK 426          
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_METVA (Elongation factor 1-alpha OS=Methanococcus vannielii GN=tuf PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.375e-48
Identity = 90/174 (51.72%), Postives = 124/174 (71.26%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 524
            VGRVETG++KPG  V F P+G   E+K+VEMHHE L  A PGDN+GFNV+ V  KD+KRG V  ++ + P   A +FT+Q++++ HP  + +GY PV   HT+ IA  F+E+  K++  +G+ LE+ P FLK GDA +VK+IPTKPMV+E+  + P LGRFA+RDM  TVA G+
Sbjct:  247 VGRVETGIIKPGDKVVFEPAGAIGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VATDFTAQIVVLQHPSVLTDGYTPVFHTHTAQIACTFAEIQKKLNPATGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGM 419          
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_THEAC (Elongation factor 1-alpha OS=Thermoplasma acidophilum GN=tuf PE=3 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 9.632e-48
Identity = 93/181 (51.38%), Postives = 125/181 (69.06%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVERR 545
            VGRVETGVLKPG  V F P+    +VKS+EMHHE LQ+A PGDN+GFNV+ +A  D+KRG V  +  D P      FT+Q+I++NHP  I  GY PV   HT+ +A +  E+V  ++ + G  L+++P F+KNGD  +VK+IP KP+V+E  S+ P LGRFAVRDM QTVA G   ++E+R
Sbjct:  245 VGRVETGVLKPGDKVIFLPADKQGDVKSIEMHHEPLQQAEPGDNIGFNVRGIAKNDIKRGDVCGHL-DTPPTVVKAFTAQIIVLNHPSVIAPGYKPVFHVHTAQVACRIDEIVKTLNPKDGTTLKEKPDFIKNGDVAIVKVIPDKPLVIEKVSEIPQLGRFAVRDMGQTVAAGQCIDLEKR 424          
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_DESMO (Elongation factor 1-alpha OS=Desulfurococcus mobilis GN=tuf PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 9.632e-48
Identity = 92/179 (51.40%), Postives = 126/179 (70.39%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 539
            VGRVETGVLK G  + F P+GL  EVK++E HH  +++A PGDN+GFNVK V  KD+KRG VA  S D P   A  FT+++++M HP  I  GY PV+  HT+ +A + +E++ KID R+GKE+EK P FLK GD  +VK  P KP+VVE +SD+  LGRFA+RDM +T+ +G +  ++
Sbjct:  253 VGRVETGVLKVGDKLVFMPAGLVAEVKTIETHHTKIEKAEPGDNIGFNVKGVEKKDIKRGDVAG-SLDVPPTVADEFTARIMVMWHPTAIAVGYTPVIHVHTASVACRITEIIAKIDPRTGKEIEKNPHFLKQGDIAIVKFKPIKPLVVEKYSDFQGLGRFAMRDMGKTIGIGQVLEIK 430          
The following BLAST results are available for this feature:
BLAST of CK740172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
EF1A_METJA1.755e-4950.83Elongation factor 1-alpha OS=Methanocaldococcus ja... [more]
EF1A_METTH1.486e-4852.87Elongation factor 1-alpha OS=Methanobacterium ther... [more]
EF1A_THESM1.941e-4849.47Elongation factor 1-alpha OS=Thermococcus sibiricu... [more]
EF1A_METLZ2.535e-4851.38Elongation factor 1-alpha OS=Methanocorpusculum la... [more]
EF1A_HYPBU2.535e-4850.28Elongation factor 1-alpha OS=Hyperthermus butylicu... [more]
EF1A_THEON3.310e-4849.47Elongation factor 1-alpha OS=Thermococcus onnurine... [more]
EF1A_THECE4.323e-4849.47Elongation factor 1-alpha OS=Thermococcus celer GN... [more]
EF1A_METVA7.375e-4851.72Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_THEAC9.632e-4851.38Elongation factor 1-alpha OS=Thermoplasma acidophi... [more]
EF1A_DESMO9.632e-4851.40Elongation factor 1-alpha OS=Desulfurococcus mobil... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6667 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740172 ID=CK740172; Name=CK740172; organism=Citrus sinensis; type=EST; length=644bp
CAGTGGGTCGCGTTGAGACCGGTGTCCTCAAGCCTGGTATGGTGGTGACA
TTTGGCCCCTCTGGATTGACAACTGAGGTTAAGTCTGTTGAGATGCACCA
CGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGTTGGCTTCAACGTGA
AGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTTGCTTCCAACTCG
AAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACCTCACAGGTCATCAT
CATGAACCACCCTGGCCAGATTGGAAATGGATATGCCCCAGTGCTTGACT
GCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTCGTGACGAAGATT
GATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAAGAA
TGGAGATGCTGGAATGGTTAAGATGATTCCCACCAAGCCCATGGTTGTTG
AAACCTTCTCTGACTACCCACCTCTTGGTCGTTTTGCCGTTAGGGACATG
CGTCAGACTGTTGCTGTTGGTGTGATTAAGAATGTTGAAAGAAGGATCCA
ACAGGTGCCAAGGTCACCAAGTCTGCAGCCAAGAAGAAGTGAATCGGGTT
GGGTAATGTTGCTTTATCCGCAGATGGAGTCTATTTTAATAATT
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