CK740172

Overview
NameCK740172
Unique NameCK740172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_SULSO (Elongation factor 1-alpha OS=Sulfolobus solfataricus GN=tuf PE=1 SV=3)

HSP 1 Score: 189.504 bits (480), Expect = 1.258e-47
Identity = 90/179 (50.28%), Postives = 128/179 (71.51%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 539
            VGRVE+GVLK G  + F P+G   EV+S+E HH  + +A PGDN+GFNV+ V  KD+KRG V  +  + P   A  FT+++I++ HP  + NGY PV+  HT+ +A + SELV+K+D R+G+E EK P+FLK GD  +VK  P KP+ VE ++++PPLGRFA+RDM +TV VG+I +V+
Sbjct:  251 VGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNNPPT-VADEFTARIIVVWHPTALANGYTPVIHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDVK 428          
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_METS5 (Elongation factor 1-alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=tuf PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.643e-47
Identity = 90/179 (50.28%), Postives = 130/179 (72.63%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 539
            VGRVE+GV+K G  + F P+G + EV+S+E HH  L++A PGDN+GFNV+ +  KD+KRG V  ++ + P   A  FT++VI++ HP  +  GY PV+  HT+ IA + SE+V ++D ++GKE EK P+F+K G++ +VK  P KP+ VE FSD+PPLGRFA+RDM +TV VGVI +V+
Sbjct:  251 VGRVESGVMKVGDKIVFMPAGKSAEVRSIETHHTKLEKAEPGDNIGFNVRGIDKKDVKRGDVVGHTTNPPT-VAEEFTARVIVVWHPTALAVGYTPVVHVHTASIACRVSEIVARLDPKTGKEAEKNPQFIKQGESAIVKFKPIKPLCVEKFSDFPPLGRFAMRDMGKTVGVGVINDVK 428          
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_METMJ (Elongation factor 1-alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=tuf PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.643e-47
Identity = 91/178 (51.12%), Postives = 123/178 (69.10%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 536
            VGRVETG++K GM V+F P+    E+KS+EMHHE + +ALPGDNVGFNV+ +   D++RG V   S D P   A  F +QV++++HP  +  GY PV  CHT+ IA  F EL+ K+D R+G+  E+ P FLK GDA +VK+ PT+PMV+E   + P LGRFAVRDM  T+A GV  ++
Sbjct:  243 VGRVETGIMKKGMKVSFMPANKEGEIKSIEMHHEEIPQALPGDNVGFNVRGIGKGDIRRGDVCGPS-DVPPTVAEEFIAQVVVLHHPSALTVGYTPVFHCHTAQIACSFVELMKKLDPRTGQVKEENPTFLKTGDAAIVKIRPTQPMVIEKVKEIPQLGRFAVRDMGSTIAAGVCMDI 419          
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_METVS (Elongation factor 1-alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=tuf PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.146e-47
Identity = 90/174 (51.72%), Postives = 123/174 (70.69%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 524
            VGRVETG++KPG  V F P+G   E+K+VEMHHE L  A PGDN+GFNV+ V  KD+KRG V  ++ + P   A +FT+Q++++ HP  +  GY PV   HT+ IA  F+E+  K++  +G+ LE+ P FLK GDA +VK+IPTKPMV+E+  + P LGRFA+RDM  TVA G+
Sbjct:  247 VGRVETGIIKPGDKVVFEPAGAIGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VATDFTAQIVVLQHPSVLTVGYTPVFHTHTAQIACTFAEIQKKLNPATGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGM 419          
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_METS3 (Elongation factor 1-alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=tuf PE=3 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 2.802e-47
Identity = 93/178 (52.25%), Postives = 120/178 (67.42%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 536
            VGRVETGV+K G  V F P+G + EVKS+EMHHE  + A PGDN+GFNV+ V   D++RG VA +  D PA  A  F +Q++++ HPG I  GY PV  CHTS +A  F EL  K+D  +G+  E+ P FLK G+A  VK+ PTKPMV+E     P +GRFA+RDM QTVA G+  +V
Sbjct:  233 VGRVETGVMKKGENVIFEPAGASGEVKSIEMHHETFETAEPGDNIGFNVRGVGKNDIRRGDVAGHVDDAPA-VAKEFDAQIVVLQHPGVITVGYTPVFHCHTSQVACTFLELTAKLDPATGQVAEENPDFLKTGNAAFVKVKPTKPMVIENAKKIPQMGRFAIRDMGQTVAAGLCIDV 409          
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_GIALA (Elongation factor 1-alpha (Fragment) OS=Giardia lamblia GN=TEF1 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.802e-47
Identity = 91/163 (55.83%), Postives = 117/163 (71.78%), Query Frame = 3
Query:    6 GRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 494
            GRVETG L PGM V F P+   +EVKSVEMHHE L++A PGDNVGFNV+ +AVKDLK+G+V  +  +DP     +FT+QVI+MNHP +I  GY PV+DCHT+HIA +F   + K+D+R+ K   + P     GD  +VKM+P KP+  ETF+DY PLG FAVR
Sbjct:  234 GRVETGELAPGMKVVFAPTSQVSEVKSVEMHHEELKKAGPGDNVGFNVRGLAVKDLKKGYVVGDVTNDPPVGCKSFTAQVIVMNHPKKIQPGYTPVIDCHTAHIACQFQLFLQKLDKRTLKPEMENPPDAGRGDCIIVKMVPQKPLCCETFNDYAPLGPFAVR 396          
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_SULTO (Elongation factor 1-alpha OS=Sulfolobus tokodaii GN=tuf PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.660e-47
Identity = 94/179 (52.51%), Postives = 129/179 (72.07%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 539
            VGRVETGVLK G  V F P G   EV+S+E HH  +++A PGDN+GFNV+ V  KD+KRG VA  S + P   A  FT+Q+I++ HP  +  GY PV+  HT+ +A + +EL +KID ++GKE+EK P+FLK+GD+ +VKM P K +VVE F ++P LGRFA+RDM +TV VGV+ +V+
Sbjct:  251 VGRVETGVLKVGDKVVFMPVGKVGEVRSIETHHTKIEKAEPGDNIGFNVRGVEKKDIKRGDVAG-SLNVPPTVADEFTAQIIVIWHPTAVSVGYTPVVHIHTASVACRITELTSKIDPKTGKEVEKNPQFLKSGDSAIVKMKPIKELVVEKFREFPALGRFAMRDMGKTVGVGVVIDVK 428          
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_THEVO (Elongation factor 1-alpha OS=Thermoplasma volcanium GN=tuf PE=3 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 4.780e-47
Identity = 92/181 (50.83%), Postives = 123/181 (67.96%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVERR 545
            VGRVETGVLKPG  V F P+    +VKS+EMHHE LQ+A PGDN+GFNV+ +A  D+KRG V  +  D P      FT+Q++++NHP  I  GY PV   HT+ +A K  E+V  ++ + G  L+ +P F+K GD  +VK+IP KP+V+E  S+ P LGRFAVRDM QTVA G   ++E+R
Sbjct:  245 VGRVETGVLKPGDKVIFLPADKQGDVKSIEMHHEPLQQAEPGDNIGFNVRGIAKNDIKRGDVCGHL-DSPPTVVRAFTAQIVVLNHPSVIAPGYKPVFHVHTAQVACKIDEIVRTLNPKDGTTLKDKPDFIKTGDIAIVKVIPDKPLVIEKVSEIPQLGRFAVRDMGQTVAAGQCIDLEKR 424          
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_METMP (Elongation factor 1-alpha OS=Methanococcus maripaludis GN=tuf PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.780e-47
Identity = 90/174 (51.72%), Postives = 123/174 (70.69%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 524
            VGRVETG++KPG  V F P+G   E+K+VEMHHE L  A PGDN+GFNV+ V  KD+KRG V  ++ + P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+
Sbjct:  247 VGRVETGIIKPGDKVVFEPAGAVGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGM 419          
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_IGNH4 (Elongation factor 1-alpha OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=tuf PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.780e-47
Identity = 90/179 (50.28%), Postives = 127/179 (70.95%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 539
            VGRVETGVLK G  V F P G+  EV+S+EMHHE +++A+PGDN+GFNV+ V+  D+KRG VA + ++ P   A  FT++V ++ HP  I  GY PV+  HT+ +A +  E+  KID R+GK +E+ P FLK GDA +V   P KPMV+E F ++ PLGRFA+RDM +TV +G++ +V+
Sbjct:  255 VGRVETGVLKVGDKVVFMPPGVGGEVRSIEMHHEKIEQAMPGDNIGFNVRGVSKNDIKRGDVAGHPENPPT-VADQFTARVFVIWHPSAIAVGYTPVIHAHTASVASRIIEIKQKIDPRTGKVIEENPSFLKPGDAAVVVFKPLKPMVIEKFQEFQPLGRFAMRDMGKTVGIGIVTDVK 432          
The following BLAST results are available for this feature:
BLAST of CK740172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
EF1A_SULSO1.258e-4750.28Elongation factor 1-alpha OS=Sulfolobus solfataric... [more]
EF1A_METS51.643e-4750.28Elongation factor 1-alpha OS=Metallosphaera sedula... [more]
EF1A_METMJ1.643e-4751.12Elongation factor 1-alpha OS=Methanoculleus marisn... [more]
EF1A_METVS2.146e-4751.72Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_METS32.802e-4752.25Elongation factor 1-alpha OS=Methanobrevibacter sm... [more]
EF1A_GIALA2.802e-4755.83Elongation factor 1-alpha (Fragment) OS=Giardia la... [more]
EF1A_SULTO3.660e-4752.51Elongation factor 1-alpha OS=Sulfolobus tokodaii G... [more]
EF1A_THEVO4.780e-4750.83Elongation factor 1-alpha OS=Thermoplasma volcaniu... [more]
EF1A_METMP4.780e-4751.72Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_IGNH44.780e-4750.28Elongation factor 1-alpha OS=Ignicoccus hospitalis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6667 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740172 ID=CK740172; Name=CK740172; organism=Citrus sinensis; type=EST; length=644bp
CAGTGGGTCGCGTTGAGACCGGTGTCCTCAAGCCTGGTATGGTGGTGACA
TTTGGCCCCTCTGGATTGACAACTGAGGTTAAGTCTGTTGAGATGCACCA
CGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGTTGGCTTCAACGTGA
AGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTTGCTTCCAACTCG
AAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACCTCACAGGTCATCAT
CATGAACCACCCTGGCCAGATTGGAAATGGATATGCCCCAGTGCTTGACT
GCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTCGTGACGAAGATT
GATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAAGAA
TGGAGATGCTGGAATGGTTAAGATGATTCCCACCAAGCCCATGGTTGTTG
AAACCTTCTCTGACTACCCACCTCTTGGTCGTTTTGCCGTTAGGGACATG
CGTCAGACTGTTGCTGTTGGTGTGATTAAGAATGTTGAAAGAAGGATCCA
ACAGGTGCCAAGGTCACCAAGTCTGCAGCCAAGAAGAAGTGAATCGGGTT
GGGTAATGTTGCTTTATCCGCAGATGGAGTCTATTTTAATAATT
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