CK740172

Overview
NameCK740172
Unique NameCK740172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_THEGJ (Elongation factor 1-alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=tuf PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.243e-47
Identity = 92/188 (48.94%), Postives = 130/188 (69.15%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSG------LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVER 542
            VGRVETGVL+ G VV F P+       +  EVKS+EMHHE LQEA PGDN+GFNV+ V   D+KRG VA ++ + P   R    F +Q+I++NHP  I  GY PVL  HT+ +AV+F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTK MV+E   + P +GRFA+RDM QTVA G++ ++++
Sbjct:  239 VGRVETGVLRVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPLQEAYPGDNIGFNVRGVGKNDIKRGDVAGHTTNPPTVVRPKDTFKAQIIVLNHPTAITVGYTPVLHAHTTQVAVRFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVILRPTKAMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQK 426          
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_PYRKO (Elongation factor 1-alpha OS=Pyrococcus kodakaraensis GN=tuf PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.243e-47
Identity = 92/188 (48.94%), Postives = 130/188 (69.15%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSG------LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVER 542
            VGRVETGVL+ G VV F P+       +  EVKS+EMHHE LQEA PGDN+GFNV+ V   D+KRG VA ++ + P   R    F +Q+I++NHP  I  GY PVL  HT+ +AV+F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTK MV+E   + P +GRFA+RDM QTVA G++ ++++
Sbjct:  239 VGRVETGVLRVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPLQEAYPGDNIGFNVRGVGKNDIKRGDVAGHTTNPPTVVRPKDTFKAQIIVLNHPTAITVGYTPVLHAHTTQVAVRFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVILRPTKAMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQK 426          
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_METM6 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=tuf PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.243e-47
Identity = 90/174 (51.72%), Postives = 123/174 (70.69%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 524
            VGRVETG++KPG  V F P+G   E+K+VEMHHE L  A PGDN+GFNV+ V  KD+KRG V  ++ + P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+
Sbjct:  247 VGRVETGIIKPGDKVIFEPAGAVGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGM 419          
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_METM5 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=tuf PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.243e-47
Identity = 90/174 (51.72%), Postives = 123/174 (70.69%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 524
            VGRVETG++KPG  V F P+G   E+K+VEMHHE L  A PGDN+GFNV+ V  KD+KRG V  ++ + P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+
Sbjct:  247 VGRVETGIIKPGDKVIFEPAGAVGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGM 419          
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_METM7 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=tuf PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.154e-47
Identity = 89/174 (51.15%), Postives = 123/174 (70.69%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 524
            VGRVETG+++PG  V F P+G   E+K+VEMHHE L  A PGDN+GFNV+ V  KD+KRG V  ++ + P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+
Sbjct:  247 VGRVETGIIRPGDKVIFEPAGAVGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVIESVKEIPQLGRFAIRDMGMTVAAGM 419          
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_METB6 (Elongation factor 1-alpha OS=Methanoregula boonei (strain 6A8) GN=tuf PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.154e-47
Identity = 90/174 (51.72%), Postives = 120/174 (68.97%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 524
            VGRVETG++K GM V+F P+    E+KS+EMHHE + +A+PGDNVGFNV+ +A  D++RG V   ++  P   A  FT+QV+++ HP  I  GY PV  CHT+  A  F EL  K+D RSG+  E+ P FLK GDA +V++ PTKPMV+E   + P LGRFAVRDM  T+A G+
Sbjct:  243 VGRVETGIMKKGMKVSFMPANKDGEIKSIEMHHEEIPQAVPGDNVGFNVRGIAKGDIRRGDVCGPAEQPPT-VADEFTAQVVVLQHPSAITVGYTPVFHCHTTQTACTFIELKKKLDPRSGQTKEENPTFLKTGDAAIVQIKPTKPMVIENVKELPQLGRFAVRDMGSTIAAGM 415          
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_METPE (Elongation factor 1-alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tuf PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.047e-46
Identity = 88/174 (50.57%), Postives = 121/174 (69.54%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 524
            VGR+ETG++K GM V+F P+    E+KS+EMHHE   +ALPGDNVGFNV+ V   D++RG V   + D P   A  FT+Q++++ HP  I  GY PV  CHT+ IA  F EL  K+D RSG+  E+ P FLK+GDA +V++ P++PMV+E+  + P LGRFA+RDM  T+A G+
Sbjct:  243 VGRIETGIMKKGMKVSFMPANKDGEIKSIEMHHEEQPQALPGDNVGFNVRGVGKNDIRRGDVCGPA-DIPPTVADEFTAQIVVLQHPSAITVGYTPVFHCHTAQIACTFVELRKKLDPRSGQTKEENPTFLKSGDAAIVQIKPSRPMVIESVKEIPQLGRFAIRDMGTTIAAGM 415          
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_SULAC (Elongation factor 1-alpha OS=Sulfolobus acidocaldarius GN=tuf PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.285e-46
Identity = 94/185 (50.81%), Postives = 128/185 (69.19%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVERRIQQV 557
            VGR+E+GVLK G  + F P G   EV+S+E HH  + +A PGDN+GFNV+ V  KD+KRG VA  S  +P   A  FT+QVI++ HP  +G GY PVL  HT+ IA + SE+ ++ID ++GKE EK P+F+K GD+ +VK  P K +V E F ++P LGRFA+RDM +TV VGVI +V+ R  +V
Sbjct:  251 VGRIESGVLKVGDKIVFMPVGKIGEVRSIETHHTKIDKAEPGDNIGFNVRGVEKKDVKRGDVAG-SVQNPPTVADEFTAQVIVIWHPTAVGVGYTPVLHVHTASIACRVSEITSRIDPKTGKEAEKNPQFIKAGDSAIVKFKPIKELVAEKFREFPALGRFAMRDMGKTVGVGVIIDVKPRKVEV 434          
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_METTP (Elongation factor 1-alpha OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=tuf PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 5.285e-46
Identity = 85/181 (46.96%), Postives = 122/181 (67.40%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVERR 545
            VGRVETGVLK G  V F P+ ++ EVKS+E+HH+ + EA PGDN+G+NV+ +   D++RG V  +  D+P   A  FT+Q++++ HP  I  GY PV  CHT+ +A   +E+  K+D R+G   E+ P F+K GDA ++ + PTKPMV+E   + P LGRFA+RDM  T+A G+ +NV  R
Sbjct:  245 VGRVETGVLKKGDKVIFEPAHVSGEVKSIEIHHQEIPEAYPGDNIGWNVRGIGKNDIRRGDVCGHV-DNPPTVAKEFTAQIVVLQHPSAISAGYTPVFHCHTAQVACTITEIKAKLDPRTGSVKEQNPAFIKTGDAAIISVRPTKPMVIEKVKEIPQLGRFAIRDMGMTIAAGMCQNVTPR 424          
BLAST of CK740172 vs. ExPASy Swiss-Prot
Match: EF1A_PYRHO (Elongation factor 1-alpha OS=Pyrococcus horikoshii GN=tuf PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.015e-46
Identity = 90/188 (47.87%), Postives = 129/188 (68.62%), Query Frame = 3
Query:    3 VGRVETGVLKPGMVVTFGPSG------LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVER 542
            VGRVETG LK G VV F P+       +  EVKS+EMHHE LQEALPGDN+GFNV+ V+  D+KRG VA ++   P   R    F +Q+I++NHP  I  GY+PVL  HT+ I V+F +++ K+D R+G  +E+ P+F+K GD+ +V + P KP+V+E   + P LGRFA+RDM  T+A G++ ++++
Sbjct:  239 VGRVETGKLKVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPLQEALPGDNIGFNVRGVSKNDIKRGDVAGHTDKPPTVVRTKDTFKAQIIVLNHPTAITVGYSPVLHAHTAQIPVRFEQILAKVDPRTGNIVEENPQFIKTGDSAIVVLRPMKPVVLEPVKEIPQLGRFAIRDMGMTIAAGMVISIQK 426          
The following BLAST results are available for this feature:
BLAST of CK740172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
EF1A_THEGJ6.243e-4748.94Elongation factor 1-alpha OS=Thermococcus gammatol... [more]
EF1A_PYRKO6.243e-4748.94Elongation factor 1-alpha OS=Pyrococcus kodakaraen... [more]
EF1A_METM66.243e-4751.72Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM56.243e-4751.72Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM78.154e-4751.15Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METB68.154e-4751.72Elongation factor 1-alpha OS=Methanoregula boonei ... [more]
EF1A_METPE4.047e-4650.57Elongation factor 1-alpha OS=Methanosphaerula palu... [more]
EF1A_SULAC5.285e-4650.81Elongation factor 1-alpha OS=Sulfolobus acidocalda... [more]
EF1A_METTP5.285e-4646.96Elongation factor 1-alpha OS=Methanosaeta thermoph... [more]
EF1A_PYRHO9.015e-4647.87Elongation factor 1-alpha OS=Pyrococcus horikoshii... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6667 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740172 ID=CK740172; Name=CK740172; organism=Citrus sinensis; type=EST; length=644bp
CAGTGGGTCGCGTTGAGACCGGTGTCCTCAAGCCTGGTATGGTGGTGACA
TTTGGCCCCTCTGGATTGACAACTGAGGTTAAGTCTGTTGAGATGCACCA
CGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGTTGGCTTCAACGTGA
AGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTTGCTTCCAACTCG
AAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACCTCACAGGTCATCAT
CATGAACCACCCTGGCCAGATTGGAAATGGATATGCCCCAGTGCTTGACT
GCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTCGTGACGAAGATT
GATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAAGAA
TGGAGATGCTGGAATGGTTAAGATGATTCCCACCAAGCCCATGGTTGTTG
AAACCTTCTCTGACTACCCACCTCTTGGTCGTTTTGCCGTTAGGGACATG
CGTCAGACTGTTGCTGTTGGTGTGATTAAGAATGTTGAAAGAAGGATCCA
ACAGGTGCCAAGGTCACCAAGTCTGCAGCCAAGAAGAAGTGAATCGGGTT
GGGTAATGTTGCTTTATCCGCAGATGGAGTCTATTTTAATAATT
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