CK740174

Overview
NameCK740174
Unique NameCK740174
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3888 contig Csv1_Contig3888:1309..2000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_DAUCA (ATP synthase subunit alpha, chloroplastic OS=Daucus carota GN=atpA PE=3 SV=1)

HSP 1 Score: 394.815 bits (1013), Expect = 2.252e-109
Identity = 207/230 (90.00%), Postives = 211/230 (91.74%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETADSPATLQYLAPYTGAALAE+FMYR+RHTLIIYDD SKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGS LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APL VEEQIMTIYTGTNGYLDSLEIGQVRK
Sbjct:  227 ETADSPATLQYLAPYTGAALAEFFMYRKRHTLIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSLLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLAVEEQIMTIYTGTNGYLDSLEIGQVRK 456
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_GOSHI (ATP synthase subunit alpha, chloroplastic OS=Gossypium hirsutum GN=atpA PE=3 SV=1)

HSP 1 Score: 393.66 bits (1010), Expect = 5.017e-109
Identity = 207/230 (90.00%), Postives = 209/230 (90.87%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK  SQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGK K                SDLDKATQNQLARGQRLRELLKQ+Q+APLTV EQI TIYTGTNGYLDSLEIGQVRK
Sbjct:  227 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKSSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVAEQISTIYTGTNGYLDSLEIGQVRK 456
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_GOSBA (ATP synthase subunit alpha, chloroplastic OS=Gossypium barbadense GN=atpA PE=3 SV=1)

HSP 1 Score: 393.66 bits (1010), Expect = 5.017e-109
Identity = 207/230 (90.00%), Postives = 209/230 (90.87%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK  SQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGK K                SDLDKATQNQLARGQRLRELLKQ+Q+APLTV EQI TIYTGTNGYLDSLEIGQVRK
Sbjct:  227 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKSSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVAEQISTIYTGTNGYLDSLEIGQVRK 456
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_VITVI (ATP synthase subunit alpha, chloroplastic OS=Vitis vinifera GN=atpA PE=3 SV=1)

HSP 1 Score: 393.275 bits (1009), Expect = 6.552e-109
Identity = 207/230 (90.00%), Postives = 209/230 (90.87%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETADSPATLQYLAPYTGAALAEYFMYR+RHTLIIYDD SKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK  S LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGK K                SDLDKATQNQLARGQRLRELLKQ+QAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK
Sbjct:  227 ETADSPATLQYLAPYTGAALAEYFMYRKRHTLIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKSSSSLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLELAQFAELEAFAQFSSDLDKATQNQLARGQRLRELLKQSQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 456
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_SPIOL (ATP synthase subunit alpha, chloroplastic OS=Spinacia oleracea GN=atpA PE=1 SV=1)

HSP 1 Score: 392.889 bits (1008), Expect = 8.557e-109
Identity = 205/230 (89.13%), Postives = 210/230 (91.30%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL S LGEGSMTALPIVETQ+GDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMK+VAGKLK                SDLDKATQNQLARGQRLRELLKQ Q+APLTVEEQ+MTIYTGTNGYLDSLE+ QVRK
Sbjct:  227 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKKVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQPQSAPLTVEEQVMTIYTGTNGYLDSLELDQVRK 456
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_CARPA (ATP synthase subunit alpha, chloroplastic OS=Carica papaya GN=atpA PE=3 SV=1)

HSP 1 Score: 392.889 bits (1008), Expect = 8.557e-109
Identity = 206/230 (89.57%), Postives = 211/230 (91.74%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETADSPATLQYLAPYTGAALAE+FMY ++HTLIIYDD SKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL SQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLDSLEIGQVRK
Sbjct:  227 ETADSPATLQYLAPYTGAALAEFFMYLKQHTLIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 456
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_PANGI (ATP synthase subunit alpha, chloroplastic OS=Panax ginseng GN=atpA PE=3 SV=1)

HSP 1 Score: 391.734 bits (1005), Expect = 1.906e-108
Identity = 206/230 (89.57%), Postives = 209/230 (90.87%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            E ADSPATLQYLAPYTGAALAEYFMYRERHT IIYDD SKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL S+LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLD LEIGQVRK
Sbjct:  227 EMADSPATLQYLAPYTGAALAEYFMYRERHTSIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSRLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDLLEIGQVRK 456
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_LACSA (ATP synthase subunit alpha, chloroplastic OS=Lactuca sativa GN=atpA PE=3 SV=1)

HSP 1 Score: 390.963 bits (1003), Expect = 3.252e-108
Identity = 205/230 (89.13%), Postives = 209/230 (90.87%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETADSPATLQYLAPYTGAALAEYFMYRERHT IIYDD SKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL S LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APL VEEQ++TIYTGTNGYLDSLEIGQVRK
Sbjct:  227 ETADSPATLQYLAPYTGAALAEYFMYRERHTSIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLGVEEQVLTIYTGTNGYLDSLEIGQVRK 456
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_COFAR (ATP synthase subunit alpha, chloroplastic OS=Coffea arabica GN=atpA PE=3 SV=1)

HSP 1 Score: 390.578 bits (1002), Expect = 4.247e-108
Identity = 206/230 (89.57%), Postives = 207/230 (90.00%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETADSPATLQYLAPYTGAALAEYFMYRERHT IIYDD SKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK  S LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+QAAPL VEEQIMTIYTGT GYLDSLEIGQVRK
Sbjct:  227 ETADSPATLQYLAPYTGAALAEYFMYRERHTSIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKSSSNLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQAAPLAVEEQIMTIYTGTTGYLDSLEIGQVRK 456
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_CALFG (ATP synthase subunit alpha, chloroplastic OS=Calycanthus floridus var. glaucus GN=atpA PE=3 SV=1)

HSP 1 Score: 390.578 bits (1002), Expect = 4.247e-108
Identity = 205/230 (89.13%), Postives = 208/230 (90.43%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETADSPATLQYLAPYTGAALAEYFMYRERHT IIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL S LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGK K                SDLDKATQNQLARGQRLRELLKQ+QAAPLTVEEQI+TIYTG NGYLD LEIGQV+K
Sbjct:  227 ETADSPATLQYLAPYTGAALAEYFMYRERHTSIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSPLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQAAPLTVEEQIVTIYTGANGYLDPLEIGQVKK 456
The following BLAST results are available for this feature:
BLAST of CK740174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_DAUCA2.252e-10990.00ATP synthase subunit alpha, chloroplastic OS=Daucu... [more]
ATPA_GOSHI5.017e-10990.00ATP synthase subunit alpha, chloroplastic OS=Gossy... [more]
ATPA_GOSBA5.017e-10990.00ATP synthase subunit alpha, chloroplastic OS=Gossy... [more]
ATPA_VITVI6.552e-10990.00ATP synthase subunit alpha, chloroplastic OS=Vitis... [more]
ATPA_SPIOL8.557e-10989.13ATP synthase subunit alpha, chloroplastic OS=Spina... [more]
ATPA_CARPA8.557e-10989.57ATP synthase subunit alpha, chloroplastic OS=Caric... [more]
ATPA_PANGI1.906e-10889.57ATP synthase subunit alpha, chloroplastic OS=Panax... [more]
ATPA_LACSA3.252e-10889.13ATP synthase subunit alpha, chloroplastic OS=Lactu... [more]
ATPA_COFAR4.247e-10889.57ATP synthase subunit alpha, chloroplastic OS=Coffe... [more]
ATPA_CALFG4.247e-10889.13ATP synthase subunit alpha, chloroplastic OS=Calyc... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6669 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740174 ID=CK740174; Name=CK740174; organism=Citrus sinensis; type=EST; length=692bp
CCGAAACGGCGGATTCCCCCGCTACGTTACAATACCTCGCTCCTTATACG
GGCGCAGCTCTAGCTGAATATTTTATGTACCGTGAACGACACACTTTAAT
CATTTATGATGATCTCTCCAAACAAGCACAGGCTTATCGACAAATGTCTC
TTCTATTACGAAGACCACCGGGTCGCGAAGCTTATCCCGGAGATGTTTTT
TATTTGCATTCACGACTTTTGGAAAGAGCCGCGAAATTAGGTTCGCAGTT
AGGCGAAGGAAGTATGACCGCTTTACCAATAGTTGAGACCCAGTCGGGAG
ATGTTTCGGCTTATATTCCTACTAATGTAATTTCCATTACAGACGGGCAA
ATATTCTTATCCGCGGATTTATTCAATGCTGGAATCAGACCCGCTATTAA
TGTGGGTATTTCCGTCTCTCGAGTAGGATCCGCAGCTCAAATTAAAGCTA
TGAAACAAGTAGCCGGCAAATTAAAATTGGAATTGGCACAATTCGCAGAA
TTAGAAGCCTTTGCACAATTTGCTTCTGATCTCGATAAAGCTACTCAGAA
CCAATTGGCAAGGGGTCAACGCTTACGTGAGTTGCTCAAACAGGCCCAAG
CAGCCCCTCTCACGGTGGAAGAACAGATAATGACTATTTATACAGGAACG
AATGGGTATCTTGATTCATTAGAAATTGGTCAAGTAAGAAAA
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