CK740174

Overview
NameCK740174
Unique NameCK740174
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_RHOS5 (ATP synthase subunit alpha OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=atpA PE=3 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 3.282e-76
Identity = 148/227 (65.20%), Postives = 166/227 (73.13%), Query Frame = 3
Query:    6 TADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQV 686
            TA  PA +Q+LAPY   A+AEYF    RH LIIYDDLSKQA AYRQMSLLLRRPPGREAYPGDVFYLHSRLLER+AKL  + G GS+TALPI+ETQ GDVSA+IPTNVISITDGQIFL  +LF  GIRPA+N G+SVSRVGS+AQ  AMK VAG +K                SDLD ATQ  L RG RL EL+KQ Q APLT  E +  I+ GT GYLD + +  V
Sbjct:  237 TASDPAPMQFLAPYAATAMAEYFRDNGRHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKLNKEHGSGSLTALPIIETQGGDVSAFIPTNVISITDGQIFLETELFYQGIRPAVNTGLSVSRVGSSAQTDAMKSVAGPVKLELAQYREMAAFAQFGSDLDAATQQLLNRGARLTELMKQPQYAPLTNAEIVCVIFAGTKGYLDKVPVKDV 463          
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_SULDN (ATP synthase subunit alpha OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=atpA PE=3 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 4.286e-76
Identity = 141/222 (63.51%), Postives = 170/222 (76.58%), Query Frame = 3
Query:    6 TADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSL 671
            TA   A LQ+LAPYTG  + EYF    RH LI+YDDLSK A AYR+MSL+LRRPPGREAYPGDVFY+HSRLLERAAK+  + G GS+TALPI+ETQ+GDVSAYIPTNVISITDGQIFL  +LFN+G+RPAINVG+SVSRVG AAQIKA KQVAG L+                SDLD+ ++ QL RGQR+ E+LKQ   +PL+VE+Q++ I+ G  G+ D +
Sbjct:  229 TAAEAAALQFLAPYTGVTMGEYFRDNARHGLIVYDDLSKHAVAYREMSLILRRPPGREAYPGDVFYIHSRLLERAAKVSDERGAGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETELFNSGVRPAINVGLSVSRVGGAAQIKATKQVAGTLRLDLAQYRELQAFAQFASDLDETSRKQLERGQRMVEVLKQPPFSPLSVEKQVLIIFAGNEGFFDDM 450          
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_STRAW (ATP synthase subunit alpha OS=Streptomyces avermitilis GN=atpA PE=3 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 4.286e-76
Identity = 140/228 (61.40%), Postives = 175/228 (76.75%), Query Frame = 3
Query:    9 ADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            A  PA  +YLAPYTG+A+ + +MY  +H LII+DDLSKQA AYR +SLLLRRPPGREAYPGDVFYLHSRLLER AKL   +G GSMT LPIVET++ DVSA+IPTNVISITDGQ FL +DLFNAG RPA+NVGISVSRVG +AQ KAM+QV+G+L+                SDLD A+++QL RGQR+ ELLKQAQ  P+  E+Q+++++ GT G +D + +  +R+
Sbjct:  240 ASDPAGFKYLAPYTGSAIGQQWMYEGKHVLIIFDDLSKQADAYRAVSLLLRRPPGREAYPGDVFYLHSRLLERCAKLSDDMGAGSMTGLPIVETKANDVSAFIPTNVISITDGQCFLESDLFNAGQRPALNVGISVSRVGGSAQHKAMRQVSGRLRVDLAQFRELEAFAAFGSDLDAASKSQLERGQRMVELLKQAQYQPMPTEDQVVSVWAGTTGKMDDVPVADIRR 467          
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_ROSDO (ATP synthase subunit alpha OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=atpA PE=3 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 4.286e-76
Identity = 144/227 (63.44%), Postives = 169/227 (74.45%), Query Frame = 3
Query:    6 TADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQV 686
            TA  PA +Q+LAPY+  A+AE+F    RH LI+YDDLSKQA +YRQMSLLLRRPPGREAYPGDVFYLHSRLLER+AKLG   G GS+TALPI+ETQ GDVSA+IPTNVISITDGQIFL  +LF  GIRPA+N G+SVSRVGS+AQ  AM  VAG +K                SDLD +TQ  LARG RL EL+KQ Q +PLT  E +  I+ GTNG+LD +++  V
Sbjct:  237 TASEPAPMQFLAPYSATAMAEHFRDNGRHALIVYDDLSKQAVSYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKLGDDAGNGSLTALPIIETQGGDVSAFIPTNVISITDGQIFLETELFYQGIRPAVNTGLSVSRVGSSAQTSAMSSVAGPVKLSLAQYREMAAFAQFGSDLDASTQQLLARGARLTELMKQPQYSPLTNAEIVCVIFAGTNGFLDKVDVKDV 463          
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_RHOBL (ATP synthase subunit alpha OS=Rhodopseudomonas blastica GN=atpA PE=3 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 4.286e-76
Identity = 144/227 (63.44%), Postives = 170/227 (74.89%), Query Frame = 3
Query:    6 TADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQV 686
            TA  PA +Q+LAP++G A+ E+F    RH L+IYDDLSKQA AYRQMSLLLRRPPGREAYPGDVFYLHSRLLER+AK+    G GS+TALPI+ETQ+GD+SAYIPTNVISITDGQIFL ++LF  GIRPA+N G+SVSRVGS+AQ  AMK VAGK+K                SDLD +TQ  L RG RL EL+KQ Q +PLT  E +  I+ GTNGYLD + +  V
Sbjct:  237 TASDPAPMQFLAPFSGTAIGEFFRDNGRHALMIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKMNGDFGAGSLTALPIIETQAGDISAYIPTNVISITDGQIFLESELFYQGIRPAVNTGLSVSRVGSSAQTSAMKSVAGKVKLELAQYREMAAFAQFGSDLDASTQALLNRGARLTELMKQPQYSPLTNAEIVCIIFAGTNGYLDKVAVRDV 463          
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_PETMO (ATP synthase subunit alpha OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=atpA PE=3 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 4.286e-76
Identity = 136/226 (60.18%), Postives = 171/226 (75.66%), Query Frame = 3
Query:    9 ADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQV 686
            A  PA+LQY+APY GAA+ EYFM+  +  L+IYDDL+K A AYR++SLLLRRPPGREAYPGD+FYLHSRLLERA++L    G GS+TALPI+ETQ+ D+SAYIPTNVISITDGQI+L   LFNAGIRPA+N+G+SVSRVG  AQ KAMK+VAG LK                +DLD+AT+ QL +G++L EL+KQ Q +P+ +EEQ+  IY    GYLD +   ++
Sbjct:  231 ASDPASLQYIAPYAGAAIGEYFMFNGKDALVIYDDLTKHAAAYREISLLLRRPPGREAYPGDIFYLHSRLLERASRLNENYGNGSLTALPIIETQANDISAYIPTNVISITDGQIYLETGLFNAGIRPAVNIGLSVSRVGGDAQTKAMKRVAGSLKLDLAQYRELESFTQFAADLDEATKKQLTKGEKLTELMKQPQYSPMEMEEQVAVIYAANEGYLDQIPTDRI 456          
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_ORITI (ATP synthase subunit alpha OS=Orientia tsutsugamushi (strain Ikeda) GN=atpA PE=3 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 4.286e-76
Identity = 143/229 (62.45%), Postives = 173/229 (75.55%), Query Frame = 3
Query:    6 TADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            +A   A+LQYLAPYTG A+ EYF     H L+IYDDLSK A AYRQ+SLLLRRPP REAYPGDVFYLHSRLLERAAKL    GEGS+TALPIVETQ+ DVSAYIPTN+ISITDGQIFL ++LF  G +PA+NVGISVSRVG+AAQIKAMK +AG +K                +DLD ++   + RG+RL ELLKQ+Q  P +VEEQI+ ++ G NGYLD + + +V++
Sbjct:  235 SASDAASLQYLAPYTGCAIGEYFRDNGMHALVIYDDLSKHAIAYRQISLLLRRPPAREAYPGDVFYLHSRLLERAAKLNKAKGEGSLTALPIVETQNSDVSAYIPTNIISITDGQIFLESELFYKGTKPALNVGISVSRVGAAAQIKAMKDIAGTVKLELAQYHEMEAFSQFGADLDSSSMQLINRGRRLSELLKQSQYCPFSVEEQIIVLFAGINGYLDKVAVSKVKE 463          
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_OENOB (ATP synthase subunit alpha OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=atpA PE=3 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 4.286e-76
Identity = 143/225 (63.56%), Postives = 171/225 (76.00%), Query Frame = 3
Query:   18 PATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            PA + YLAPY GAAL EYFMY  +H LI+YDDLSKQA AYR++SL+LRRPPGREAYPGDVFYLHSRLLERAAKL  +LG GSMTALPI+ETQ+GDVSAYIPTNVISITDGQIFL AD F +G RPAI+ G SVSRVG  AQIKAMK+V+G L+                SDLD  TQ +LARG+R  E+L Q    P+ VE Q++ +Y  T+GYLD +++  +++
Sbjct:  231 PAPMLYLAPYVGAALGEYFMYNGKHVLIVYDDLSKQATAYRELSLILRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSMTALPIIETQAGDVSAYIPTNVISITDGQIFLDADQFYSGNRPAIDAGTSVSRVGGDAQIKAMKKVSGTLRLDLASYHELEAFAQFGSDLDAPTQAKLARGRRTVEVLNQPLHQPMPVEHQVIVLYALTHGYLDDIDVSDIQR 455          
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_LEUCK (ATP synthase subunit alpha OS=Leuconostoc citreum (strain KM20) GN=atpA PE=3 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 4.286e-76
Identity = 142/225 (63.11%), Postives = 172/225 (76.44%), Query Frame = 3
Query:   18 PATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            PA + YLAPY GAA+ E FMY  +H LI+YDDLSKQA AYR++SL+LRRPPGREAYPGDVFYLHSRLLERAAKL  +LG GSMTALPI+ETQ+GDVSAYIPTNVISITDGQ+FL AD F AG+RPAI+ G SVSRVG  AQIKAMK+VAG L+                SDLD ATQ +LARG+R  E+LKQ    P+ V+ Q++ +Y  T+GY+D + +  +++
Sbjct:  231 PAPMLYLAPYVGAAMGEEFMYNGKHVLIVYDDLSKQATAYRELSLILRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSMTALPIIETQAGDVSAYIPTNVISITDGQVFLDADQFYAGVRPAIDAGTSVSRVGGDAQIKAMKKVAGTLRLDLASFRELESFAQFGSDLDAATQAKLARGRRTVEVLKQPLHKPMPVQHQVIVLYALTHGYIDDIAVEDIQR 455          
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_PROVI (ATP synthase subunit alpha OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=atpA PE=3 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 5.598e-76
Identity = 150/247 (60.73%), Postives = 177/247 (71.66%), Query Frame = 3
Query:    6 TADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQL------------------GEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            TA  PA LQ++AP+ GAAL EYF    RH L+IYDDLSKQA AYRQ+SLLLRRPPGREAYPGDVF+LHSRLLERAAK+   +                  G GS+TALP++ETQ+GDVSAYIPTNVISITDGQIFL ++LFN+G RPAINVGISVSRVG AAQIKAMK+VAG L+                SDLDK T+ QL RG RL E+LKQ Q  P+ VE+Q+  I+ GT G LD++ +  +RK
Sbjct:  229 TASDPAPLQFIAPFAGAALGEYFRDTGRHALVIYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFFLHSRLLERAAKITDDIEVAKKMNDLPEALKPMVKGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLESNLFNSGQRPAINVGISVSRVGGAAQIKAMKKVAGTLRLDLAQFRELEAFSKFGSDLDKTTKAQLDRGARLVEILKQGQYIPMPVEKQVAIIFLGTQGLLDAVAVDHIRK 475          
The following BLAST results are available for this feature:
BLAST of CK740174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_RHOS53.282e-7665.20ATP synthase subunit alpha OS=Rhodobacter sphaeroi... [more]
ATPA_SULDN4.286e-7663.51ATP synthase subunit alpha OS=Sulfurimonas denitri... [more]
ATPA_STRAW4.286e-7661.40ATP synthase subunit alpha OS=Streptomyces avermit... [more]
ATPA_ROSDO4.286e-7663.44ATP synthase subunit alpha OS=Roseobacter denitrif... [more]
ATPA_RHOBL4.286e-7663.44ATP synthase subunit alpha OS=Rhodopseudomonas bla... [more]
ATPA_PETMO4.286e-7660.18ATP synthase subunit alpha OS=Petrotoga mobilis (s... [more]
ATPA_ORITI4.286e-7662.45ATP synthase subunit alpha OS=Orientia tsutsugamus... [more]
ATPA_OENOB4.286e-7663.56ATP synthase subunit alpha OS=Oenococcus oeni (str... [more]
ATPA_LEUCK4.286e-7663.11ATP synthase subunit alpha OS=Leuconostoc citreum ... [more]
ATPA_PROVI5.598e-7660.73ATP synthase subunit alpha OS=Prosthecochloris vib... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6669 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740174 ID=CK740174; Name=CK740174; organism=Citrus sinensis; type=EST; length=692bp
CCGAAACGGCGGATTCCCCCGCTACGTTACAATACCTCGCTCCTTATACG
GGCGCAGCTCTAGCTGAATATTTTATGTACCGTGAACGACACACTTTAAT
CATTTATGATGATCTCTCCAAACAAGCACAGGCTTATCGACAAATGTCTC
TTCTATTACGAAGACCACCGGGTCGCGAAGCTTATCCCGGAGATGTTTTT
TATTTGCATTCACGACTTTTGGAAAGAGCCGCGAAATTAGGTTCGCAGTT
AGGCGAAGGAAGTATGACCGCTTTACCAATAGTTGAGACCCAGTCGGGAG
ATGTTTCGGCTTATATTCCTACTAATGTAATTTCCATTACAGACGGGCAA
ATATTCTTATCCGCGGATTTATTCAATGCTGGAATCAGACCCGCTATTAA
TGTGGGTATTTCCGTCTCTCGAGTAGGATCCGCAGCTCAAATTAAAGCTA
TGAAACAAGTAGCCGGCAAATTAAAATTGGAATTGGCACAATTCGCAGAA
TTAGAAGCCTTTGCACAATTTGCTTCTGATCTCGATAAAGCTACTCAGAA
CCAATTGGCAAGGGGTCAACGCTTACGTGAGTTGCTCAAACAGGCCCAAG
CAGCCCCTCTCACGGTGGAAGAACAGATAATGACTATTTATACAGGAACG
AATGGGTATCTTGATTCATTAGAAATTGGTCAAGTAAGAAAA
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