CK740174

Overview
NameCK740174
Unique NameCK740174
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3888 contig Csv1_Contig3888:1309..2000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_CUSRE (ATP synthase subunit alpha, plastid OS=Cuscuta reflexa GN=atpA PE=3 SV=1)

HSP 1 Score: 385.185 bits (988), Expect = 1.784e-106
Identity = 201/230 (87.39%), Postives = 207/230 (90.00%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETADSPATLQYLAPYTGAALAEYFMY ERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL S+LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLS DLFNAGIRPAINVGISVSRVGSAAQIKAMK+VAGKLK                SDLDK +QNQLARGQRLRELLKQ+Q+APLTV EQIMTIYTG NGYLDSL +GQVRK
Sbjct:  227 ETADSPATLQYLAPYTGAALAEYFMYSERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSKLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSVDLFNAGIRPAINVGISVSRVGSAAQIKAMKKVAGKLKLELAQFAELEAFAQFASDLDKTSQNQLARGQRLRELLKQSQSAPLTVAEQIMTIYTGINGYLDSLPLGQVRK 456
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_ANTFO (ATP synthase subunit alpha, chloroplastic OS=Anthoceros formosae GN=atpA PE=2 SV=1)

HSP 1 Score: 385.185 bits (988), Expect = 1.784e-106
Identity = 200/230 (86.96%), Postives = 208/230 (90.43%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETADSPATLQYLAPYTGAALAEYFMYR++HTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL SQLGEGSMTALPIVETQ+GDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APL VEEQ+ TIYTG NGYLD LE+ QV+K
Sbjct:  227 ETADSPATLQYLAPYTGAALAEYFMYRKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLAVEEQVATIYTGVNGYLDVLEVEQVKK 456
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_CYCTA (ATP synthase subunit alpha, chloroplastic OS=Cycas taitungensis GN=atpA PE=3 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 3.043e-106
Identity = 201/230 (87.39%), Postives = 208/230 (90.43%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETADSPATLQYLAPYTGAALAEYFMY+E+HTLIIYDDLSKQA+AYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL SQLGEGSMTALPIVETQ+GDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLD+ATQNQLARGQRLRELLKQ+Q+APLTVEEQI TIY G NGYLD LEI QVRK
Sbjct:  227 ETADSPATLQYLAPYTGAALAEYFMYKEQHTLIIYDDLSKQARAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDRATQNQLARGQRLRELLKQSQSAPLTVEEQIATIYAGANGYLDILEIVQVRK 456
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_AMBTC (ATP synthase subunit alpha, chloroplastic OS=Amborella trichopoda GN=atpA PE=3 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 3.043e-106
Identity = 201/230 (87.39%), Postives = 207/230 (90.00%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETADSPATLQYLAPYTGAALAEYFMYRERHTLII+DD SKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK  S+LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGK K                SDLDKATQNQLARGQRLRELLKQ+QAAPL VEEQ++TIYTG NGYLD LEIGQV+K
Sbjct:  227 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIHDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKSSSRLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQAAPLAVEEQVVTIYTGANGYLDPLEIGQVKK 456
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_MARPO (ATP synthase subunit alpha, chloroplastic OS=Marchantia polymorpha GN=atpA PE=3 SV=1)

HSP 1 Score: 383.645 bits (984), Expect = 5.191e-106
Identity = 200/230 (86.96%), Postives = 208/230 (90.43%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETA+SPATLQYLAPYTGAALAEYFMYR++HTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL S LGEGSMTALPIVETQ+GDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APL+VEEQI TIYTG NGYLD LE GQV+K
Sbjct:  227 ETANSPATLQYLAPYTGAALAEYFMYRKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSNLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLSVEEQIATIYTGVNGYLDVLETGQVKK 456
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_STAPU (ATP synthase subunit alpha, chloroplastic OS=Staurastrum punctulatum GN=atpA PE=3 SV=1)

HSP 1 Score: 383.259 bits (983), Expect = 6.780e-106
Identity = 197/230 (85.65%), Postives = 207/230 (90.00%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETAD+PATLQYLAPYTGAA+AEYFMYR +HTL+IYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL SQLGEGSMTALPIVETQ+GDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+QAAPL VEEQ+ TIYTG NGYLD +E+ QVR+
Sbjct:  227 ETADAPATLQYLAPYTGAAIAEYFMYRGKHTLVIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFSQFASDLDKATQNQLARGQRLRELLKQSQAAPLAVEEQVATIYTGVNGYLDVIEVAQVRR 456
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_CUSEX (ATP synthase subunit alpha, plastid OS=Cuscuta exaltata GN=atpA PE=3 SV=1)

HSP 1 Score: 383.259 bits (983), Expect = 6.780e-106
Identity = 200/230 (86.96%), Postives = 208/230 (90.43%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETADSPATLQYLAPYTGAALAEYFMY ERHTLIIYDDLSKQAQAYRQ+SLLLRRPPGREAYPGDVFYLHSRLLERAAKL S+LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMK+VAGKLK                SDLDK +QNQLARGQRLRELLKQ+Q+APLTV EQIMTIYTG NGYLDSL++ QVRK
Sbjct:  227 ETADSPATLQYLAPYTGAALAEYFMYSERHTLIIYDDLSKQAQAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSKLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKKVAGKLKLELAQFAELEAFAQFASDLDKTSQNQLARGQRLRELLKQSQSAPLTVAEQIMTIYTGINGYLDSLQLRQVRK 456
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_PIPCE (ATP synthase subunit alpha, chloroplastic OS=Piper cenocladum GN=atpA PE=3 SV=1)

HSP 1 Score: 382.874 bits (982), Expect = 8.855e-106
Identity = 200/230 (86.96%), Postives = 206/230 (89.57%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETADSPATLQYLAPYTGAALAEYFMYRE+HT IIYDD SKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL S LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLS+DLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APL VEEQI+TIYTG NGYLD LE GQV+K
Sbjct:  227 ETADSPATLQYLAPYTGAALAEYFMYREQHTSIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNSSLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSSDLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLAVEEQIVTIYTGANGYLDPLETGQVKK 456
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_LIRTU (ATP synthase subunit alpha, chloroplastic OS=Liriodendron tulipifera GN=atpA PE=3 SV=1)

HSP 1 Score: 382.489 bits (981), Expect = 1.157e-105
Identity = 200/230 (86.96%), Postives = 206/230 (89.57%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETADSPATLQYLAPYTGAALAEYFMYRERHT IIYDD SKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK  S+LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGK K                SDLDKATQNQLARGQRLRELLKQ+Q+ PLTVE+QI+TIYTG NGYLD LEIGQV+K
Sbjct:  227 ETADSPATLQYLAPYTGAALAEYFMYRERHTSIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKSSSRLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSTPLTVEDQIVTIYTGANGYLDPLEIGQVKK 456
[Close]
BLAST of CK740174 vs. ExPASy Swiss-Prot
Match: ATPA_ACOCL (ATP synthase subunit alpha, chloroplastic OS=Acorus calamus GN=atpA PE=3 SV=1)

HSP 1 Score: 382.104 bits (980), Expect = 1.510e-105
Identity = 198/230 (86.09%), Postives = 208/230 (90.43%), Query Frame = 3 
Query:    3 ETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRK 692
            ETADSPATLQYLAPYTGAALAEYFMYRERHT IIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK  S+LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGK K                SDLDKATQNQLARG+RLRELLKQ+Q+ PL V+EQ++TIYTGTNGYLD+LEIGQV++
Sbjct:  227 ETADSPATLQYLAPYTGAALAEYFMYRERHTSIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKSSSRLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLELAQFAELEAFAQFASDLDKATQNQLARGKRLRELLKQSQSEPLAVDEQVVTIYTGTNGYLDTLEIGQVKE 456
The following BLAST results are available for this feature:
BLAST of CK740174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_CUSRE1.784e-10687.39ATP synthase subunit alpha, plastid OS=Cuscuta ref... [more]
ATPA_ANTFO1.784e-10686.96ATP synthase subunit alpha, chloroplastic OS=Antho... [more]
ATPA_CYCTA3.043e-10687.39ATP synthase subunit alpha, chloroplastic OS=Cycas... [more]
ATPA_AMBTC3.043e-10687.39ATP synthase subunit alpha, chloroplastic OS=Ambor... [more]
ATPA_MARPO5.191e-10686.96ATP synthase subunit alpha, chloroplastic OS=March... [more]
ATPA_STAPU6.780e-10685.65ATP synthase subunit alpha, chloroplastic OS=Staur... [more]
ATPA_CUSEX6.780e-10686.96ATP synthase subunit alpha, plastid OS=Cuscuta exa... [more]
ATPA_PIPCE8.855e-10686.96ATP synthase subunit alpha, chloroplastic OS=Piper... [more]
ATPA_LIRTU1.157e-10586.96ATP synthase subunit alpha, chloroplastic OS=Lirio... [more]
ATPA_ACOCL1.510e-10586.09ATP synthase subunit alpha, chloroplastic OS=Acoru... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6669 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740174 ID=CK740174; Name=CK740174; organism=Citrus sinensis; type=EST; length=692bp
CCGAAACGGCGGATTCCCCCGCTACGTTACAATACCTCGCTCCTTATACG
GGCGCAGCTCTAGCTGAATATTTTATGTACCGTGAACGACACACTTTAAT
CATTTATGATGATCTCTCCAAACAAGCACAGGCTTATCGACAAATGTCTC
TTCTATTACGAAGACCACCGGGTCGCGAAGCTTATCCCGGAGATGTTTTT
TATTTGCATTCACGACTTTTGGAAAGAGCCGCGAAATTAGGTTCGCAGTT
AGGCGAAGGAAGTATGACCGCTTTACCAATAGTTGAGACCCAGTCGGGAG
ATGTTTCGGCTTATATTCCTACTAATGTAATTTCCATTACAGACGGGCAA
ATATTCTTATCCGCGGATTTATTCAATGCTGGAATCAGACCCGCTATTAA
TGTGGGTATTTCCGTCTCTCGAGTAGGATCCGCAGCTCAAATTAAAGCTA
TGAAACAAGTAGCCGGCAAATTAAAATTGGAATTGGCACAATTCGCAGAA
TTAGAAGCCTTTGCACAATTTGCTTCTGATCTCGATAAAGCTACTCAGAA
CCAATTGGCAAGGGGTCAACGCTTACGTGAGTTGCTCAAACAGGCCCAAG
CAGCCCCTCTCACGGTGGAAGAACAGATAATGACTATTTATACAGGAACG
AATGGGTATCTTGATTCATTAGAAATTGGTCAAGTAAGAAAA
back to top