CK740186

Overview
NameCK740186
Unique NameCK740186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RHO1_SCHPO (GTP-binding protein rho1 OS=Schizosaccharomyces pombe GN=rho1 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.378e-42
Identity = 84/166 (50.60%), Postives = 115/166 (69.28%), Query Frame = 2
Query:  110 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            K V VGDGA GKTC+LI ++  TFP  YVPTVF+N+ A+V VDG  V L LWDTAGQEDY+RLRPLSY  + V L+ F++ S  S +NV +KWI E+ H+   +PI+LV  K DLR+D + + +       P+TT +G+ + + IGA  Y+ECS+KT + V+ VF+
Sbjct:    8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPILLVACKADLRNDPKIIEELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVFE 173          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RACD_DICDI (Rho-related protein racD OS=Dictyostelium discoideum GN=racD PE=2 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 3.106e-42
Identity = 85/166 (51.20%), Postives = 110/166 (66.27%), Query Frame = 2
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 598
            +K V VGDGAVGKT +LI YT+  FP DYVPTVFDNF+   + D   VNL LWDTAGQEDY+ LRPLSY   DVF++ +S++ + S +N+  KW+PE+     G PIILVGTK DLR+DK+ L+        P++  +G  L K IGA  + ECS+ T   V  +F
Sbjct:    9 VKVVVVGDGAVGKTSLLILYTTKAFPKDYVPTVFDNFNCLEMYDNKPVNLVLWDTAGQEDYDNLRPLSYPQTDVFIICYSVVKRDSLDNIKYKWLPEINQTNQGTPIILVGTKTDLREDKKTLSQLQESKQEPVSRDEGVALAKEIGAVQFFECSALTGNGVNDIF 174          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RHO5_SCHPO (GTP-binding protein rho5 OS=Schizosaccharomyces pombe GN=rho5 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.629e-41
Identity = 83/166 (50.00%), Postives = 114/166 (68.67%), Query Frame = 2
Query:  110 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            K V VGDGA GKTC+LI ++  TFP  YVPTVF+N+ A+V VDG  + L LWDTAGQEDY+RLRPLSY  + V L+ FS+ +  S +NV +KWI E+ H+   +PI+LVG K+DLR+D + + +       PIT  +G+ + + IGA  Y+ECS+K  + V  VF+
Sbjct:    8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPILLVGCKVDLRNDPKTIEELSKTSQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVNEVFE 173          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RHO4_YEAST (GTP-binding protein RHO4 OS=Saccharomyces cerevisiae GN=RHO4 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.305e-40
Identity = 80/166 (48.19%), Postives = 114/166 (68.67%), Query Frame = 2
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            +K V VGDGAVGKTC+LISY   TFPTDY+PT+F+N+  N+   +G  + L LWDTAGQE+Y+RLRPLSY  ADV ++ +S+ SK S +NV   W PE++H+ P  PI+LVG K DL     + AD+   + +  +  E L K +GA  +I+CS++ ++N+  VF+
Sbjct:   73 LKIVVVGDGAVGKTCLLISYVQGTFPTDYIPTIFENYVTNIEGPNGQIIELALWDTAGQEEYSRLRPLSYTNADVLMVCYSVGSKTSLKNVEDLWFPEVKHFCPSTPIMLVGLKSDL-----YEADNLSDL-VEPSSAESLAKRLGAFAHIQCSARLKENIDEVFE 232          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RHO_DISOM (Ras-like GTP-binding protein O-RHO OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.797e-40
Identity = 83/166 (50.00%), Postives = 112/166 (67.47%), Query Frame = 2
Query:  110 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD--KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P +PIILVG K    D+  ++ LA      P+     +E+   I A  Y+ECS+KT++ V+ VF+
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNIPIILVGNKKTAGDEHTRRELAKMK-QEPVKPDDAKEMGSRIKAFGYLECSAKTKEGVREVFE 171          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RACG_DICDI (Rho-related protein racG OS=Dictyostelium discoideum GN=racG PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.483e-39
Identity = 80/167 (47.90%), Postives = 111/167 (66.47%), Query Frame = 2
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            IK   VG+G +GKT ML+SYTSN+   +Y PTVFDN+S  ++ +    NL LWDTAGQE++++LR LSY   DVFLL FSLI+ +S+ N+   W+ EL    P  PI+LVGT++DL+ +   L        +PI+T QG EL K I A  ++ECS+ TQ+N+  VF+
Sbjct:    4 IKVCVVGEGGIGKTSMLLSYTSNSISNEYQPTVFDNYSTLLMHNKKPYNLSLWDTAGQEEFSKLRRLSYPQTDVFLLCFSLINPSSFSNILDSWVQELNENCPNTPIVLVGTQMDLKSNSVILDRLCEKKQLPISTQQGIELSKKINAFDFVECSALTQKNLHLVFE 170          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RHOF_BOVIN (Rho-related GTP-binding protein RhoF OS=Bos taurus GN=RHOF PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.352e-39
Identity = 77/171 (45.03%), Postives = 113/171 (66.08%), Query Frame = 2
Query:   92 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGA--VPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 598
            S  + +K V VGDG  GKT +L+ Y+  +FP  Y P+VF+ ++A+V V    V L L+DTAGQEDY+RLRPLSY+   + L+ + +++  SY+NV  KW PE+ H+  G+P++L+G K DLR DK+ L     A   PIT  QG+   + I A +Y+ECS+K ++NV+ VF
Sbjct:   19 SGRKELKIVIVGDGGCGKTSLLMVYSQGSFPEHYAPSVFEKYTASVTVGSKEVTLNLYDTAGQEDYDRLRPLSYQNTHLVLICYDVMNPTSYDNVLIKWFPEVTHFCRGIPMVLIGCKTDLRKDKEQLRKLRAAQLEPITYTQGQSACEQIRAALYLECSAKFRENVEDVF 189          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RHOD_HUMAN (Rho-related GTP-binding protein RhoD OS=Homo sapiens GN=RHOD PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.595e-38
Identity = 76/168 (45.24%), Postives = 105/168 (62.50%), Query Frame = 2
Query:  101 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 598
            R +K V VGDG  GKT +L+ +    FP  Y PTVF+ +  N+ V G  V+L +WDTAGQ+DY+RLRPL Y  A V LL F + S  S++N+  +W PE+ H+   VPII+VG K DL  DK  +      G  P+T  +G+E+ + +GA  Y+ECS++   NV AVF
Sbjct:   16 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLCKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 183          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RACL_DICDI (Rho-related protein racL OS=Dictyostelium discoideum GN=racL PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.595e-38
Identity = 86/171 (50.29%), Postives = 113/171 (66.08%), Query Frame = 2
Query:  101 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRDDK---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            ++IK V  GDGAVGKT +LI++ S  FP DY PTVFDNFS   +      NLGL+DTAGQED++RLRPL Y   D+FL+ +S+I+  SY NV  KW  E++ Y    +P+ILVGT+ DLR DK   + LA    A PI+  +G  +RK IGA  + ECS  + +NVK VF+
Sbjct:    2 QYIKMVICGDGAVGKTSLLIAFASGEFPRDYQPTVFDNFSTLYMFQNKAYNLGLFDTAGQEDFDRLRPLGYNDTDLFLICYSVINPPSYANVYDKWYSEIKLYTGSEIPLILVGTQNDLRHDKATRETLALKQQA-PISYEEGMMMRKRIGAKAFTECSVVSGKNVKQVFE 171          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RHOD_MOUSE (Rho-related GTP-binding protein RhoD OS=Mus musculus GN=Rhod PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.083e-38
Identity = 73/166 (43.98%), Postives = 110/166 (66.27%), Query Frame = 2
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 598
            +K V VGDG  GKT +++ +    FP  Y PTVF+ ++A + + G  V+L +WDTAGQ+DY+RLRPL Y  A+V LL F + +  S++NV+ +W PE+ H+  GVPII+VG K+DLR DK  + +       P+T  +G ++ + +GA  Y+ECS++   NV+AVF
Sbjct:   18 VKVVLVGDGGCGKTSLMMVFAKGAFPESYSPTVFERYNATLQMKGKPVHLQIWDTAGQDDYDRLRPLFYPDANVLLLCFDVTNPNSFDNVSNRWYPEVTHFCKGVPIIVVGCKIDLRKDKVLVNNLRKKRLEPVTYHRGHDMARSVGAVAYLECSARLHDNVEAVF 183          
The following BLAST results are available for this feature:
BLAST of CK740186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHO1_SCHPO2.378e-4250.60GTP-binding protein rho1 OS=Schizosaccharomyces po... [more]
RACD_DICDI3.106e-4251.20Rho-related protein racD OS=Dictyostelium discoide... [more]
RHO5_SCHPO2.629e-4150.00GTP-binding protein rho5 OS=Schizosaccharomyces po... [more]
RHO4_YEAST1.305e-4048.19GTP-binding protein RHO4 OS=Saccharomyces cerevisi... [more]
RHO_DISOM3.797e-4050.00Ras-like GTP-binding protein O-RHO OS=Discopyge om... [more]
RACG_DICDI5.483e-3947.90Rho-related protein racG OS=Dictyostelium discoide... [more]
RHOF_BOVIN9.352e-3945.03Rho-related GTP-binding protein RhoF OS=Bos taurus... [more]
RHOD_HUMAN1.595e-3845.24Rho-related GTP-binding protein RhoD OS=Homo sapie... [more]
RACL_DICDI1.595e-3850.29Rho-related protein racL OS=Dictyostelium discoide... [more]
RHOD_MOUSE2.083e-3843.98Rho-related GTP-binding protein RhoD OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6681 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740186 ID=CK740186; Name=CK740186; organism=Citrus sinensis; type=EST; length=603bp
GTACTTTGTTCTGAGTTAGGGTTCTGTAGCTGTAAAACCAAAGAAAGACG
AGTAATAAAGATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCG
AGGTTCATAAAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTG
CATGCTCATTTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAA
CAGTATTTGACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTT
AATCTTGGGTTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAG
ACCATTGAGCTACCGCGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCA
TTAGCAAGGCCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTG
AGGCATTATGCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGA
TCTTCGGGATGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAA
TTACCACGGCCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTT
TACATTGAGTGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGA
TGC
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