CK740186

Overview
NameCK740186
Unique NameCK740186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC2_ORYSJ (Rac-like GTP-binding protein 2 OS=Oryza sativa subsp. japonica GN=RAC2 PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 4.150e-79
Identity = 140/169 (82.84%), Postives = 154/169 (91.12%), Query Frame = 2 
Query:   95 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            A++FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANV VDG+ VNLGLWDTAGQEDY+RLRPLSYRGAD+F+LAFSLIS+ASYENV KKW+PELR +AP VPI+LVGTKLDLRD + +LADHP A  ITTAQGEELRK IGA  YIECSSKTQQN+KAVFD
Sbjct:    4 ATKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDHRSYLADHPAASAITTAQGEELRKQIGAAAYIECSSKTQQNIKAVFD 172
[Close]
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC1_ORYSJ (Rac-like GTP-binding protein 1 OS=Oryza sativa subsp. japonica GN=RAC1 PE=1 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 4.150e-79
Identity = 139/170 (81.76%), Postives = 156/170 (91.76%), Query Frame = 2 
Query:   92 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            +A+RFIKCVTVGDGAVGKTCMLI YT N FPTDY+PTVFDNFSANV VDGS VNLGLWDTAGQEDY+RLRPLSYRGADVF+L+FSLIS+ASYENV KKW+PELR +APGVP++LVGTKLDLR+D+ +LADHP +  ITT QGEELRKLIGA  YIECSSKTQ+N+KAVFD
Sbjct:    6 AATRFIKCVTVGDGAVGKTCMLICYTCNKFPTDYIPTVFDNFSANVSVDGSVVNLGLWDTAGQEDYSRLRPLSYRGADVFILSFSLISRASYENVQKKWMPELRRFAPGVPVVLVGTKLDLREDRAYLADHPASSIITTEQGEELRKLIGAVAYIECSSKTQRNIKAVFD 175
[Close]
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC7_ARATH (Rac-like GTP-binding protein ARAC7 OS=Arabidopsis thaliana GN=ARAC7 PE=1 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 1.577e-78
Identity = 143/171 (83.63%), Postives = 153/171 (89.47%), Query Frame = 2 
Query:   89 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            MSAS+FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANV VDG  VNLGLWDTAGQEDY+RLRPLSYRGAD+F+LAFSLISKASYENV KKW+PELR +AP VPI+LVGTKLDLRDDK +LADH     IT+ QGEELRK IGA  YIECSSKTQQNVKAVFD
Sbjct:    1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNV--ITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFD 169
[Close]
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC9_ARATH (Rac-like GTP-binding protein ARAC9 OS=Arabidopsis thaliana GN=ARAC9 PE=1 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 3.288e-76
Identity = 136/170 (80.00%), Postives = 152/170 (89.41%), Query Frame = 2 
Query:   92 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            +A+ FIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNF+ANV+VDG TVNLGLWDTAGQEDYNR+RPLSYRGADVF+LAFSLIS+ S+EN+AKKW+PELRHYAP VPI+LVGTK DLRD+ QF  ++PGA  I   QG+ELRK IGA  YIECSSK Q NVKAVFD
Sbjct:   14 TATTFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFNANVLVDGKTVNLGLWDTAGQEDYNRVRPLSYRGADVFILAFSLISRPSFENIAKKWVPELRHYAPTVPIVLVGTKSDLRDNMQFPKNYPGACTIFPEQGQELRKEIGALAYIECSSKAQMNVKAVFD 183
[Close]
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC1_RAT (Ras-related C3 botulinum toxin substrate 1 OS=Rattus norvegicus GN=Rac1 PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.796e-59
Identity = 111/167 (66.47%), Postives = 129/167 (77.25%), Query Frame = 2 
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQEDY+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK  +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170
[Close]
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC1_MOUSE (Ras-related C3 botulinum toxin substrate 1 OS=Mus musculus GN=Rac1 PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.796e-59
Identity = 111/167 (66.47%), Postives = 129/167 (77.25%), Query Frame = 2 
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQEDY+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK  +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170
[Close]
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC1_HUMAN (Ras-related C3 botulinum toxin substrate 1 OS=Homo sapiens GN=RAC1 PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.796e-59
Identity = 111/167 (66.47%), Postives = 129/167 (77.25%), Query Frame = 2 
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQEDY+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK  +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170
[Close]
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC1_CANFA (Ras-related C3 botulinum toxin substrate 1 OS=Canis familiaris GN=RAC1 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.796e-59
Identity = 111/167 (66.47%), Postives = 129/167 (77.25%), Query Frame = 2 
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQEDY+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK  +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170
[Close]
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC1_BOVIN (Ras-related C3 botulinum toxin substrate 1 OS=Bos taurus GN=RAC1 PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.796e-59
Identity = 111/167 (66.47%), Postives = 129/167 (77.25%), Query Frame = 2 
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQEDY+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK  +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170
[Close]
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC2_DROME (Ras-related protein Rac2 OS=Drosophila melanogaster GN=Rac2 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.813e-58
Identity = 109/167 (65.27%), Postives = 129/167 (77.25%), Query Frame = 2 
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   +NLGLWDTAGQEDY+RLRPLSY   DVFL+ FSL++ AS+ENV  KW PE+RH+ P VPIILVGTKLDLRDDKQ +         PIT  QG  + K I A  Y+ECS+ TQ+ +K VFD
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWFPEVRHHCPSVPIILVGTKLDLRDDKQTIEKLKDKKLTPITYPQGLAMAKEIAAVKYLECSALTQKGLKTVFD 170
The following BLAST results are available for this feature:
BLAST of CK740186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC2_ORYSJ4.150e-7982.84Rac-like GTP-binding protein 2 OS=Oryza sativa sub... [more]
RAC1_ORYSJ4.150e-7981.76Rac-like GTP-binding protein 1 OS=Oryza sativa sub... [more]
RAC7_ARATH1.577e-7883.63Rac-like GTP-binding protein ARAC7 OS=Arabidopsis ... [more]
RAC9_ARATH3.288e-7680.00Rac-like GTP-binding protein ARAC9 OS=Arabidopsis ... [more]
RAC1_RAT2.796e-5966.47Ras-related C3 botulinum toxin substrate 1 OS=Ratt... [more]
RAC1_MOUSE2.796e-5966.47Ras-related C3 botulinum toxin substrate 1 OS=Mus ... [more]
RAC1_HUMAN2.796e-5966.47Ras-related C3 botulinum toxin substrate 1 OS=Homo... [more]
RAC1_CANFA2.796e-5966.47Ras-related C3 botulinum toxin substrate 1 OS=Cani... [more]
RAC1_BOVIN2.796e-5966.47Ras-related C3 botulinum toxin substrate 1 OS=Bos ... [more]
RAC2_DROME1.813e-5865.27Ras-related protein Rac2 OS=Drosophila melanogaste... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6681 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740186 ID=CK740186; Name=CK740186; organism=Citrus sinensis; type=EST; length=603bp
GTACTTTGTTCTGAGTTAGGGTTCTGTAGCTGTAAAACCAAAGAAAGACG
AGTAATAAAGATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCG
AGGTTCATAAAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTG
CATGCTCATTTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAA
CAGTATTTGACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTT
AATCTTGGGTTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAG
ACCATTGAGCTACCGCGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCA
TTAGCAAGGCCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTG
AGGCATTATGCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGA
TCTTCGGGATGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAA
TTACCACGGCCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTT
TACATTGAGTGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGA
TGC
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