CK740186

Overview
NameCK740186
Unique NameCK740186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC2_HUMAN (Ras-related C3 botulinum toxin substrate 2 OS=Homo sapiens GN=RAC2 PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.092e-58
Identity = 110/167 (65.87%), Postives = 127/167 (76.05%), Query Frame = 2
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   VNLGLWDTAGQEDY+RLRPLSY   DVFL+ FSL+S ASYENV  KW PE+RH+ P  PIILVGTKLDLRDDK  +         PIT  QG  L K I +  Y+ECS+ TQ+ +K VFD
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFD 170          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC2_BOVIN (Ras-related C3 botulinum toxin substrate 2 OS=Bos taurus GN=RAC2 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.092e-58
Identity = 110/167 (65.87%), Postives = 127/167 (76.05%), Query Frame = 2
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   VNLGLWDTAGQEDY+RLRPLSY   DVFL+ FSL+S ASYENV  KW PE+RH+ P  PIILVGTKLDLRDDK  +         PIT  QG  L K I +  Y+ECS+ TQ+ +K VFD
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFD 170          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC2_MOUSE (Ras-related C3 botulinum toxin substrate 2 OS=Mus musculus GN=Rac2 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.038e-58
Identity = 110/167 (65.87%), Postives = 127/167 (76.05%), Query Frame = 2
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   VNLGLWDTAGQEDY+RLRPLSY   DVFL+ FSL+S ASYENV  KW PE+RH+ P  PIILVGTKLDLRDDK  +         PIT  QG  L K I +  Y+ECS+ TQ+ +K VFD
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKDIDSVKYLECSALTQRGLKTVFD 170          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC3_MOUSE (Ras-related C3 botulinum toxin substrate 3 OS=Mus musculus GN=Rac3 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 5.274e-58
Identity = 111/168 (66.07%), Postives = 132/168 (78.57%), Query Frame = 2
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQEDY+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PI+LVGTKLDLRDDK   + L D   A PIT  QG  + + IG+  Y+ECS+ TQ+ +K VFD
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLA-PITYPQGLAMAREIGSVKYLECSALTQRGLKTVFD 170          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC3_HUMAN (Ras-related C3 botulinum toxin substrate 3 OS=Homo sapiens GN=RAC3 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 5.274e-58
Identity = 111/168 (66.07%), Postives = 132/168 (78.57%), Query Frame = 2
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQEDY+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PI+LVGTKLDLRDDK   + L D   A PIT  QG  + + IG+  Y+ECS+ TQ+ +K VFD
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLA-PITYPQGLAMAREIGSVKYLECSALTQRGLKTVFD 170          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC1_DROME (Ras-related protein Rac1 OS=Drosophila melanogaster GN=Rac1 PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 5.274e-58
Identity = 108/167 (64.67%), Postives = 128/167 (76.65%), Query Frame = 2
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   +NLGLWDTAGQEDY+RLRPLSY   DVFL+ FSL++ AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK  +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWYPEVRHHCPSTPIILVGTKLDLRDDKNTIEKLRDKKLAPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFD 170          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC2_CAVPO (Ras-related C3 botulinum toxin substrate 2 OS=Cavia porcellus GN=RAC2 PE=2 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 7.615e-57
Identity = 107/167 (64.07%), Postives = 127/167 (76.05%), Query Frame = 2
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   VNLGLWDTAGQEDY+RLRPLSY   DVFL+ FSL+S ASYENV   W P++RH+ P  PIIL+GTKLDLRDDK+ +         PIT  QG  L K I +  Y+ECS+ TQ+ +K VFD
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVHANWYPKVRHHCPSTPIILLGTKLDLRDDKETIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFD 170          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RACA_ENTHI (Rho-related protein racA OS=Entamoeba histolytica GN=RACA PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 2.894e-56
Identity = 103/167 (61.68%), Postives = 129/167 (77.25%), Query Frame = 2
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            +KCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SA V+VD   +NLGLWDTAGQEDY+RLRPLSY   DVFL+ FS++S  S++NV+ KW PE+ H+ P  P +LVGTKLD+R+DK+ L   +     PITT QGE   K IGA  YIECS+ TQ+N++ VFD
Sbjct:    4 VKCVIVGDGAVGKTCLLISYTTNAFPNEYIPTVFDNYSATVMVDSKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSVVSPPSFDNVSSKWQPEVSHHCPKTPCLLVGTKLDMREDKEQLKRLEEKKITPITTEQGEAKCKDIGAVKYIECSALTQKNLRLVFD 170          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC1A_DICDI (Rho-related protein rac1A OS=Dictyostelium discoideum GN=rac1A PE=1 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 6.447e-56
Identity = 107/167 (64.07%), Postives = 128/167 (76.65%), Query Frame = 2
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK--QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  +NLGLWDTAGQEDY+RLRPLSY   DVFL+ FS+IS +S+ENV  KW PE+ H+AP VPIILVGTKLD+R+DK  Q         PI+  QG    K I A  Y+ECS+ TQ+ +K VFD
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIISPSSFENVNGKWHPEICHHAPNVPIILVGTKLDMREDKETQDRLKEKKLYPISYEQGLAKMKEINAVKYLECSALTQKGLKTVFD 170          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAC1B_DICDI (Rho-related protein rac1B OS=Dictyostelium discoideum GN=rac1B PE=1 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 8.419e-56
Identity = 105/167 (62.87%), Postives = 128/167 (76.65%), Query Frame = 2
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK--QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  +NLGLWDTAGQEDY+RLRPLSY   DVFL+ FS++S AS+ENV  KW PE+ H+AP VPIILVGTKLD+R+D+  Q         P++  QG    K I A  Y+ECS+ TQ+ +K VFD
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIVSPASFENVNGKWHPEICHHAPNVPIILVGTKLDMREDRDTQDRLKEKKLYPVSYEQGLSKMKEINAVKYLECSALTQKGLKTVFD 170          
The following BLAST results are available for this feature:
BLAST of CK740186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC2_HUMAN3.092e-5865.87Ras-related C3 botulinum toxin substrate 2 OS=Homo... [more]
RAC2_BOVIN3.092e-5865.87Ras-related C3 botulinum toxin substrate 2 OS=Bos ... [more]
RAC2_MOUSE4.038e-5865.87Ras-related C3 botulinum toxin substrate 2 OS=Mus ... [more]
RAC3_MOUSE5.274e-5866.07Ras-related C3 botulinum toxin substrate 3 OS=Mus ... [more]
RAC3_HUMAN5.274e-5866.07Ras-related C3 botulinum toxin substrate 3 OS=Homo... [more]
RAC1_DROME5.274e-5864.67Ras-related protein Rac1 OS=Drosophila melanogaste... [more]
RAC2_CAVPO7.615e-5764.07Ras-related C3 botulinum toxin substrate 2 OS=Cavi... [more]
RACA_ENTHI2.894e-5661.68Rho-related protein racA OS=Entamoeba histolytica ... [more]
RAC1A_DICDI6.447e-5664.07Rho-related protein rac1A OS=Dictyostelium discoid... [more]
RAC1B_DICDI8.419e-5662.87Rho-related protein rac1B OS=Dictyostelium discoid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6681 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740186 ID=CK740186; Name=CK740186; organism=Citrus sinensis; type=EST; length=603bp
GTACTTTGTTCTGAGTTAGGGTTCTGTAGCTGTAAAACCAAAGAAAGACG
AGTAATAAAGATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCG
AGGTTCATAAAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTG
CATGCTCATTTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAA
CAGTATTTGACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTT
AATCTTGGGTTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAG
ACCATTGAGCTACCGCGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCA
TTAGCAAGGCCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTG
AGGCATTATGCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGA
TCTTCGGGATGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAA
TTACCACGGCCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTT
TACATTGAGTGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGA
TGC
back to top