CK740186

Overview
NameCK740186
Unique NameCK740186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAP1B_XENLA (Ras-related protein Rap-1b OS=Xenopus laevis GN=rap1b PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.417e-15
Identity = 49/167 (29.34%), Postives = 82/167 (49.10%), Query Frame = 2
Query:  101 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 598
            R  K V +G G VGK+ + + +    F   Y PT+ D++   V VDG    L + DTAG E +  +R L  +    F L +S+ +++++ ++       LR      VP+ILVG K DL D++           +   QG+ L +      ++E S+K++ NV  +F
Sbjct:    2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.417e-15
Identity = 52/165 (31.52%), Postives = 83/165 (50.30%), Query Frame = 2
Query:  110 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 598
            K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE Y+ L P+ YRGA   ++ + + +  ++   AK W+ EL R  +P + I L G K DL   +        AV    AQ       +   +++E S+KT  NV  +F
Sbjct:   23 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLASKR--------AVEFQEAQAYAEDNSL---LFMETSAKTAMNVNEIF 175          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAB4B_RAT (Ras-related protein Rab-4B OS=Rattus norvegicus GN=Rab4b PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.417e-15
Identity = 54/165 (32.73%), Postives = 83/165 (50.30%), Query Frame = 2
Query:  110 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 598
            K + +G    GK+C+L  +  N F  D   T+   F + VV V G TV L +WDTAGQE +  +    YRGA   LL + + S+ +Y ++A  W+ + R  A P + +IL G K DL  +++             AQ  EL       +++E S+ T +NV+  F
Sbjct:   10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRF----AQENEL-------MFLETSALTGENVEEAF 162          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAB4B_MOUSE (Ras-related protein Rab-4B OS=Mus musculus GN=Rab4b PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 9.417e-15
Identity = 54/165 (32.73%), Postives = 83/165 (50.30%), Query Frame = 2
Query:  110 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 598
            K + +G    GK+C+L  +  N F  D   T+   F + VV V G TV L +WDTAGQE +  +    YRGA   LL + + S+ +Y ++A  W+ + R  A P + +IL G K DL  +++             AQ  EL       +++E S+ T +NV+  F
Sbjct:   10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRF----AQENEL-------MFLETSALTGENVEEAF 162          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAB4B_HUMAN (Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4B PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.417e-15
Identity = 54/165 (32.73%), Postives = 83/165 (50.30%), Query Frame = 2
Query:  110 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 598
            K + +G    GK+C+L  +  N F  D   T+   F + VV V G TV L +WDTAGQE +  +    YRGA   LL + + S+ +Y ++A  W+ + R  A P + +IL G K DL  +++             AQ  EL       +++E S+ T +NV+  F
Sbjct:   10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRF----AQENEL-------MFLETSALTGENVEEAF 162          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAB4B_CANFA (Ras-related protein Rab-4B OS=Canis familiaris GN=RAB4B PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.417e-15
Identity = 54/165 (32.73%), Postives = 83/165 (50.30%), Query Frame = 2
Query:  110 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 598
            K + +G    GK+C+L  +  N F  D   T+   F + VV V G TV L +WDTAGQE +  +    YRGA   LL + + S+ +Y ++A  W+ + R  A P + +IL G K DL  +++             AQ  EL       +++E S+ T +NV+  F
Sbjct:   10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRF----AQENEL-------MFLETSALTGENVEEAF 162          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAB3B_RAT (Ras-related protein Rab-3B OS=Rattus norvegicus GN=Rab3b PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 9.417e-15
Identity = 51/166 (30.72%), Postives = 84/166 (50.60%), Query Frame = 2
Query:  110 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V      V L +WDTAGQE Y  +    YRGA  F+L + + ++ S+ N  + W  +++ Y+     +ILVG K D+ +++           I T +G  L + +G   + E S+K   +V+  F+
Sbjct:   24 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEEER----------VIPTEKGRLLAEQLGFD-FFEASAKENISVRQAFE 177          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAB31_MOUSE (Ras-related protein Rab-31 OS=Mus musculus GN=Rab31 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.417e-15
Identity = 51/170 (30.00%), Postives = 92/170 (54.12%), Query Frame = 2
Query:   95 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL-WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 598
            A R +K   +GD  VGK+ ++  +  + F  +  PT+  +F    V  G+ ++  L WDTAGQE ++ L P+ YRG+   ++ + +  + S+  + KKW+ EL+ + P  + + + G K DL D ++        VP+  A  +E  + IGA + +E S+K   N++ +F
Sbjct:    2 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE--------VPLKDA--KEYAESIGA-IVVETSAKNAINIEELF 159          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAB30_MOUSE (Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.417e-15
Identity = 49/165 (29.70%), Postives = 83/165 (50.30%), Query Frame = 2
Query:  110 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 598
            K V +G+  VGKTC++  +T   FP     T+  +F    V ++G  V L +WDTAGQE +  +    YR A+  +L + +  + S+     +W+ E+  YA   V  +LVG K+DL + ++          ++  + EE  +      Y+E S+K   NV+ +F
Sbjct:   11 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESF-RCLPEWLREIEQYASNKVITVLVGNKIDLAERRE----------VSQQRAEEFSEAQDM-YYLETSAKESDNVEKLF 163          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAB30_HUMAN (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 9.417e-15
Identity = 49/165 (29.70%), Postives = 83/165 (50.30%), Query Frame = 2
Query:  110 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 598
            K V +G+  VGKTC++  +T   FP     T+  +F    V ++G  V L +WDTAGQE +  +    YR A+  +L + +  + S+     +W+ E+  YA   V  +LVG K+DL + ++          ++  + EE  +      Y+E S+K   NV+ +F
Sbjct:   11 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESF-RCLPEWLREIEQYASNKVITVLVGNKIDLAERRE----------VSQQRAEEFSEAQDM-YYLETSAKESDNVEKLF 163          
The following BLAST results are available for this feature:
BLAST of CK740186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAP1B_XENLA9.417e-1529.34Ras-related protein Rap-1b OS=Xenopus laevis GN=ra... [more]
RAB5C_BOVIN9.417e-1531.52Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C ... [more]
RAB4B_RAT9.417e-1532.73Ras-related protein Rab-4B OS=Rattus norvegicus GN... [more]
RAB4B_MOUSE9.417e-1532.73Ras-related protein Rab-4B OS=Mus musculus GN=Rab4... [more]
RAB4B_HUMAN9.417e-1532.73Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4... [more]
RAB4B_CANFA9.417e-1532.73Ras-related protein Rab-4B OS=Canis familiaris GN=... [more]
RAB3B_RAT9.417e-1530.72Ras-related protein Rab-3B OS=Rattus norvegicus GN... [more]
RAB31_MOUSE9.417e-1530.00Ras-related protein Rab-31 OS=Mus musculus GN=Rab3... [more]
RAB30_MOUSE9.417e-1529.70Ras-related protein Rab-30 OS=Mus musculus GN=Rab3... [more]
RAB30_HUMAN9.417e-1529.70Ras-related protein Rab-30 OS=Homo sapiens GN=RAB3... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6681 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740186 ID=CK740186; Name=CK740186; organism=Citrus sinensis; type=EST; length=603bp
GTACTTTGTTCTGAGTTAGGGTTCTGTAGCTGTAAAACCAAAGAAAGACG
AGTAATAAAGATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCG
AGGTTCATAAAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTG
CATGCTCATTTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAA
CAGTATTTGACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTT
AATCTTGGGTTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAG
ACCATTGAGCTACCGCGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCA
TTAGCAAGGCCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTG
AGGCATTATGCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGA
TCTTCGGGATGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAA
TTACCACGGCCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTT
TACATTGAGTGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGA
TGC
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