CK740186

Overview
NameCK740186
Unique NameCK740186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAB5C_CANFA (Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.230e-14
Identity = 52/165 (31.52%), Postives = 83/165 (50.30%), Query Frame = 2
Query:  110 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 598
            K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE Y+ L P+ YRGA   ++ + + +  ++   AK W+ EL R  +P + I L G K DL   +        AV    AQ       +   +++E S+KT  NV  +F
Sbjct:   23 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLASKR--------AVEFQEAQAYADDNSL---LFMETSAKTAMNVNEIF 175          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAB3B_MOUSE (Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.230e-14
Identity = 50/166 (30.12%), Postives = 84/166 (50.60%), Query Frame = 2
Query:  110 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V      V L +WDTAGQE Y  +    YRGA  F+L + + ++ S+ N  + W  +++ Y+     +ILVG K D+ +++           + T +G  L + +G   + E S+K   +V+  F+
Sbjct:   24 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEEER----------VVPTEKGRLLAEQLGFD-FFEASAKENISVRQAFE 177          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAB3B_MESAU (Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.230e-14
Identity = 50/166 (30.12%), Postives = 84/166 (50.60%), Query Frame = 2
Query:  110 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V      V L +WDTAGQE Y  +    YRGA  F+L + + ++ S+ N  + W  +++ Y+     +ILVG K D+ +++           + T +G  L + +G   + E S+K   +V+  F+
Sbjct:   24 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEEER----------VVPTEKGRLLAEQLGFD-FFEASAKENISVRQAFE 177          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAB3B_BOVIN (Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.230e-14
Identity = 50/166 (30.12%), Postives = 84/166 (50.60%), Query Frame = 2
Query:  110 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V      V L +WDTAGQE Y  +    YRGA  F+L + + ++ S+ N  + W  +++ Y+     +ILVG K D+ +++           + T +G  L + +G   + E S+K   +V+  F+
Sbjct:   24 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEEER----------VVPTEKGRLLAEQLGFD-FFEASAKENISVRQAFE 177          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAB31_RAT (Ras-related protein Rab-31 OS=Rattus norvegicus GN=Rab31 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.230e-14
Identity = 52/170 (30.59%), Postives = 92/170 (54.12%), Query Frame = 2
Query:   95 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL-WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 598
            A R +K   +GD  VGK+ ++  +  + F  +  PT+  +F    V  G+ ++  L WDTAGQE ++ L P+ YRG+   ++ + +  + S+  + KKW+ EL+ + P  + + + G K DL D ++        VP+  A  +E  + IGA V +E S+K   N++ +F
Sbjct:    2 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE--------VPLKDA--KEYAESIGALV-VETSAKNAINIEELF 159          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAB18_CAEBR (Ras-related protein Rab-18 OS=Caenorhabditis briggsae GN=rab-18 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.230e-14
Identity = 46/168 (27.38%), Postives = 89/168 (52.98%), Query Frame = 2
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPII--LVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            +K + +G+  VGK+ +++ +  + F  +   T+  +F   ++ +DG+ V L +WDTAGQE +  L P  YRGA   +  + + S++S+E + K W+ E+  Y     +I  +V  K+D+ +             +T  +G +  K     ++IE S+KT++ V+  F+
Sbjct:   12 LKILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMTIDGNRVKLAIWDTAGQERFRTLTPSYYRGAQGVICVYDVTSRSSFEKL-KHWMTEVDTYCTNDNVIKMMVANKIDMPNR-----------TVTREEGLKFAKR-HRTLFIEASAKTKEGVQCTFE 166          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAB12_HUMAN (Putative Ras-related protein Rab-12 OS=Homo sapiens GN=RAB12 PE=5 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.230e-14
Identity = 50/166 (30.12%), Postives = 83/166 (50.00%), Query Frame = 2
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 598
            ++ + +G   VGKT ++  +T +TF      TV  +F    V + G  + L +WDTAGQE +N +    YR A   +L + +  K +++++  KW+  +  YA     ++LVG KLD   D++          IT  QGE+  + I    + E S+K   NV  +F
Sbjct:   43 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 197          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.230e-14
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = 2
Query:  110 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 457
            K V +GD  VGK+ +L  +T N F  +   T+   F+   + VD   +   +WDTAGQE Y  +    YRGA   LL + +   +++ENV + W+ ELR H  P + ++LVG K DLR
Sbjct:   15 KVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENV-ETWLKELRNHTDPNIVVMLVGNKSDLR 131          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: YPT10_YEAST (GTP-binding protein YPT10 OS=Saccharomyces cerevisiae GN=YPT10 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.606e-14
Identity = 57/166 (34.34%), Postives = 82/166 (49.40%), Query Frame = 2
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV----DGST---VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQN 583
            IK V +GD +VGKT ++    S  F   +  T+   F    +     D ST   +++ +WDTAGQE Y  L P+ YR A++ L+ F L   +S +  AK W  +L+  A G  +I+VG K DL        +H G V I         +L G P Y+  S+KT  N
Sbjct:    5 IKVVLLGDSSVGKTSIVTRLKSGKFLAKHAATIGAAFITKTIEVPSNDSSTEKRIHMEIWDTAGQERYKSLVPMYYRDANIALIVFELGDVSSLQ-CAKTWFQDLQDRAQGTQVIIVGNKYDL-----VCEEHSGEVTIPA-------ELQGLP-YVAVSAKTGYN 156          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.606e-14
Identity = 48/136 (35.29%), Postives = 75/136 (55.15%), Query Frame = 2
Query:  110 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR-------DDKQFLADHPG 490
            K V +GD  VGK+ +L  +T N F  +   T+   F+   + V+G TV   +WDTAGQE Y  +    YRGA   LL + +  + +++NV ++W+ ELR +A   + I++ G K DL+       +D Q LA+  G
Sbjct:   14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEG 148          
The following BLAST results are available for this feature:
BLAST of CK740186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB5C_CANFA1.230e-1431.52Ras-related protein Rab-5C OS=Canis familiaris GN=... [more]
RAB3B_MOUSE1.230e-1430.12Ras-related protein Rab-3B OS=Mus musculus GN=Rab3... [more]
RAB3B_MESAU1.230e-1430.12Ras-related protein Rab-3B OS=Mesocricetus auratus... [more]
RAB3B_BOVIN1.230e-1430.12Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B ... [more]
RAB31_RAT1.230e-1430.59Ras-related protein Rab-31 OS=Rattus norvegicus GN... [more]
RAB18_CAEBR1.230e-1427.38Ras-related protein Rab-18 OS=Caenorhabditis brigg... [more]
RAB12_HUMAN1.230e-1430.12Putative Ras-related protein Rab-12 OS=Homo sapien... [more]
RAA1C_ARATH1.230e-1438.14Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
YPT10_YEAST1.606e-1434.34GTP-binding protein YPT10 OS=Saccharomyces cerevis... [more]
RB2BV_BETVU1.606e-1435.29Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6681 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740186 ID=CK740186; Name=CK740186; organism=Citrus sinensis; type=EST; length=603bp
GTACTTTGTTCTGAGTTAGGGTTCTGTAGCTGTAAAACCAAAGAAAGACG
AGTAATAAAGATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCG
AGGTTCATAAAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTG
CATGCTCATTTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAA
CAGTATTTGACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTT
AATCTTGGGTTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAG
ACCATTGAGCTACCGCGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCA
TTAGCAAGGCCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTG
AGGCATTATGCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGA
TCTTCGGGATGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAA
TTACCACGGCCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTT
TACATTGAGTGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGA
TGC
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