CK740186

Overview
NameCK740186
Unique NameCK740186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RHOQ_MOUSE (Rho-related GTP-binding protein RhoQ OS=Mus musculus GN=Rhoq PE=1 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 6.244e-51
Identity = 93/167 (55.69%), Postives = 128/167 (76.65%), Query Frame = 2
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS+++ AS++NV ++W+PEL+ YAP VP +L+GT++DLRDD + LA  +     P+   QG++L K IGA  Y+ECS+ TQ+ +K VFD
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPVCVEQGQKLAKEIGACCYVECSALTQKGLKTVFD 176          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RACF1_DICDI (Rho-related protein racF1 OS=Dictyostelium discoideum GN=racF1 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 8.155e-51
Identity = 101/169 (59.76%), Postives = 128/169 (75.74%), Query Frame = 2
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD----KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            IKCV VGDGAVGKTCMLISYT+N FP++Y+PTVFDN+ AN++++G   +LGLWDTAGQEDY+RLRPLSY   DVFL+ FS+IS+AS+ENV  KW  E+ H+APGVPIILVGTK D+R+D    K+    +   VP    +G E  K I A +Y+E S+ TQ+ +K VFD
Sbjct:    4 IKCVVVGDGAVGKTCMLISYTTNGFPSEYIPTVFDNYCANLMLEGKPYSLGLWDTAGQEDYDRLRPLSYPHTDVFLICFSIISQASFENVTTKWFKEVNHHAPGVPIILVGTKQDIRNDNDSIKKLKEKNIELVPY--EKGLEKAKEINA-IYLEASALTQRGIKDVFD 169          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: CDC42_ASHGO (Cell division control protein 42 OS=Ashbya gossypii GN=CDC42 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.065e-50
Identity = 93/167 (55.69%), Postives = 123/167 (73.65%), Query Frame = 2
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            +KCV VGDGAVGKTC+LISYT+N FP DYVPTVFDN++  V++      LGL+DTAGQEDY+RLRPLSY   DVFL+ FS++S  S+ENV +KW PE+ H+ PGVP ++VGT++DLR++K  +         PIT  QGE+  + + A  Y+ECS+ TQ+ +K VFD
Sbjct:    4 LKCVVVGDGAVGKTCLLISYTTNQFPADYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPSTDVFLVCFSVVSPPSFENVKEKWFPEVHHHCPGVPCLIVGTQIDLRENKMVIEKLQRQRLRPITPEQGEKFARELRAVKYVECSALTQRGLKNVFD 170          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: CDC42_AEDAE (Cdc42 homolog OS=Aedes aegypti GN=Cdc42 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.391e-50
Identity = 95/167 (56.89%), Postives = 125/167 (74.85%), Query Frame = 2
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+    P +LVGT++DLRD++  L         PIT  QGE+L K + A  Y+ECS+ TQ+ +K VFD
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDEQSTLEKLAKNKQKPITLEQGEKLAKELKAVKYVECSALTQKGLKNVFD 170          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: CDC42_DROME (Cdc42 homolog OS=Drosophila melanogaster GN=Cdc42 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.817e-50
Identity = 95/167 (56.89%), Postives = 124/167 (74.25%), Query Frame = 2
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+    P +LVGT++DLRD+   L         PIT  QGE+L K + A  Y+ECS+ TQ+ +K VFD
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDENSTLEKLAKNKQKPITMEQGEKLAKELKAVKYVECSALTQKGLKNVFD 170          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: CDC42_ANOGA (Cdc42 homolog OS=Anopheles gambiae GN=Cdc42 PE=2 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 1.817e-50
Identity = 95/167 (56.89%), Postives = 124/167 (74.25%), Query Frame = 2
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+    P +LVGT++DLRD+   L         PIT  QGE+L K + A  Y+ECS+ TQ+ +K VFD
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDENSTLEKLAKNKQKPITLEQGEKLAKELKAVKYVECSALTQKGLKNVFD 170          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: CDC42_DROPS (Cdc42 homolog OS=Drosophila pseudoobscura pseudoobscura GN=Cdc42 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.373e-50
Identity = 95/167 (56.89%), Postives = 124/167 (74.25%), Query Frame = 2
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+    P +LVGT++DLRD+   L         PIT  QGE+L K + A  Y+ECS+ TQ+ +K VFD
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDETSTLEKLAKNKQKPITMEQGEKLAKELKAVKYVECSALTQKGLKNVFD 170          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RHOJ_HUMAN (Rho-related GTP-binding protein RhoJ OS=Homo sapiens GN=RHOJ PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.099e-50
Identity = 95/178 (53.37%), Postives = 127/178 (71.35%), Query Frame = 2
Query:   74 CTWREMSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            C  R     + +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++  V V G    LGL+DTAGQEDYN+LRPLSY   DVFL+ FS+++ ASY NV ++W+PEL+   P VP +L+GT++DLRDD + LA   +    P+T   G +L K IGA  Y+ECS+ TQ+ +KAVFD
Sbjct:   11 CGCRGNDEKKMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELKDCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFD 188          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RACF2_DICDI (Rho-related protein racF2 OS=Dictyostelium discoideum GN=racF2 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.099e-50
Identity = 100/169 (59.17%), Postives = 129/169 (76.33%), Query Frame = 2
Query:  107 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD----KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            IKCV VGDGAVGKTCMLISYT+N FP++Y+PTVFDN+ AN+++DG   +LGLWDTAGQE+Y+RLRPLSY   DVFL+ FS+IS++S+ENV+ KW  E+ H+APGVPI+LVGTK D+R+D    K+    +   VP    +G E  K I A +Y+E S+ TQ+ VK VFD
Sbjct:    4 IKCVVVGDGAVGKTCMLISYTTNGFPSEYLPTVFDNYCANLMLDGKPYSLGLWDTAGQEEYDRLRPLSYPQTDVFLICFSIISQSSFENVSTKWFKEVNHHAPGVPIVLVGTKQDIRNDNDSIKKLKERNIELVPY--EKGLEKAKEINA-IYLEASALTQRGVKNVFD 169          
BLAST of CK740186 vs. ExPASy Swiss-Prot
Match: RHOJ_MOUSE (Rho-related GTP-binding protein RhoJ OS=Mus musculus GN=Rhoj PE=1 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 4.047e-50
Identity = 94/170 (55.29%), Postives = 126/170 (74.12%), Query Frame = 2
Query:   98 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 601
            +R +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++  V V G    LGL+DTAGQEDYN+LRPLSY   DVFL+ FS+++ ASY NV ++W+PEL+   P VP +L+GT++DLRDD + LA   +    P+T   G +L K IGA  Y+ECS+ TQ+ +KAVFD
Sbjct:   19 NRILKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELKDCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFD 188          
The following BLAST results are available for this feature:
BLAST of CK740186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHOQ_MOUSE6.244e-5155.69Rho-related GTP-binding protein RhoQ OS=Mus muscul... [more]
RACF1_DICDI8.155e-5159.76Rho-related protein racF1 OS=Dictyostelium discoid... [more]
CDC42_ASHGO1.065e-5055.69Cell division control protein 42 OS=Ashbya gossypi... [more]
CDC42_AEDAE1.391e-5056.89Cdc42 homolog OS=Aedes aegypti GN=Cdc42 PE=3 SV=1[more]
CDC42_DROME1.817e-5056.89Cdc42 homolog OS=Drosophila melanogaster GN=Cdc42 ... [more]
CDC42_ANOGA1.817e-5056.89Cdc42 homolog OS=Anopheles gambiae GN=Cdc42 PE=2 S... [more]
CDC42_DROPS2.373e-5056.89Cdc42 homolog OS=Drosophila pseudoobscura pseudoob... [more]
RHOJ_HUMAN3.099e-5053.37Rho-related GTP-binding protein RhoJ OS=Homo sapie... [more]
RACF2_DICDI3.099e-5059.17Rho-related protein racF2 OS=Dictyostelium discoid... [more]
RHOJ_MOUSE4.047e-5055.29Rho-related GTP-binding protein RhoJ OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6681 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740186 ID=CK740186; Name=CK740186; organism=Citrus sinensis; type=EST; length=603bp
GTACTTTGTTCTGAGTTAGGGTTCTGTAGCTGTAAAACCAAAGAAAGACG
AGTAATAAAGATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCG
AGGTTCATAAAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTG
CATGCTCATTTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAA
CAGTATTTGACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTT
AATCTTGGGTTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAG
ACCATTGAGCTACCGCGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCA
TTAGCAAGGCCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTG
AGGCATTATGCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGA
TCTTCGGGATGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAA
TTACCACGGCCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTT
TACATTGAGTGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGA
TGC
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