CK740187

Overview
NameCK740187
Unique NameCK740187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length493
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 4.699e-52
Identity = 97/107 (90.65%), Postives = 101/107 (94.39%), Query Frame = 2
Query:    5 GLAVEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVK 325
            GLA EIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYN DKAWDD W+FWVGPFIGAAIAA YHQ++LRA A K
Sbjct:  170 GLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNNDKAWDDHWIFWVGPFIGAAIAAAYHQYVLRASAAK 276          
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 8.015e-52
Identity = 96/110 (87.27%), Postives = 101/110 (91.82%), Query Frame = 2
Query:    5 GLAVEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 334
            GLA EIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAVI+NK K WDD W+FWVGPFIGA IAAFYHQF+LRA   K+LG
Sbjct:  168 GLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKSKPWDDHWIFWVGPFIGATIAAFYHQFVLRASGSKSLG 277          
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 1.786e-51
Identity = 95/109 (87.16%), Postives = 101/109 (92.66%), Query Frame = 2
Query:    8 LAVEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 334
            L  EIIGTFVLVYTVFSATDPKRSARDSH+PVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAVIYN +KAWDDQW+FWVGPF+GA  AA YHQ+ILRA A+KALG
Sbjct:  164 LGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFLGALAAAAYHQYILRASAIKALG 272          
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.786e-51
Identity = 95/107 (88.79%), Postives = 100/107 (93.46%), Query Frame = 2
Query:    5 GLAVEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVK 325
            GL  EIIGTFVLVYTVFSATDPKR+ARDSH+PVLAPLPIGFAVFMVHLATIPITGTGINPARSLG AVIYNKDKAWDDQW+FWVGP IGAAIAA YHQ++LRA A K
Sbjct:  174 GLGAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGTAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASAAK 280          
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 3.978e-51
Identity = 92/109 (84.40%), Postives = 101/109 (92.66%), Query Frame = 2
Query:    8 LAVEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 334
            L  EIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARS G AVI+N DKAWDDQW++WVGPF+GAA+AA YHQ+ILR  A+KALG
Sbjct:  173 LGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFVGAAVAAIYHQYILRGSAIKALG 281          
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.974e-50
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 2
Query:    8 LAVEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKAL 331
            L  EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS GAAVIYN +KAWDD W+FWVGPF+GA  AA YHQ+ILRA A+KAL
Sbjct:  162 LGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKAL 269          
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 1.974e-50
Identity = 94/109 (86.24%), Postives = 100/109 (91.74%), Query Frame = 2
Query:    8 LAVEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 334
            L  EIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARS+GAAVIYN+ KAWDD W+FW GPFIGA  AA YHQ+ILRA A+KALG
Sbjct:  166 LGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSIGAAVIYNQKKAWDDHWIFWAGPFIGALAAAAYHQYILRAAAIKALG 274          
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.974e-50
Identity = 94/105 (89.52%), Postives = 98/105 (93.33%), Query Frame = 2
Query:    5 GLAVEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGA 319
            GLA EIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAV+YN  KAW DQW+FWVGPFIGAAIAA YHQ +LRA A
Sbjct:  174 GLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRASA 278          
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 2.578e-50
Identity = 93/105 (88.57%), Postives = 98/105 (93.33%), Query Frame = 2
Query:    5 GLAVEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGA 319
            GLA EIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARSLGAAV+YN  KAW DQW+FWVGPFIGAAIAA YHQ +LRA A
Sbjct:  169 GLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRASA 273          
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 4.398e-50
Identity = 94/105 (89.52%), Postives = 98/105 (93.33%), Query Frame = 2
Query:    5 GLAVEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGA 319
            GLA EIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLG AV+YN +KAW DQW+FWVGPFIGAAIAA YHQ ILRA A
Sbjct:  172 GLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGVAVVYNNNKAWSDQWIFWVGPFIGAAIAALYHQVILRASA 276          
The following BLAST results are available for this feature:
BLAST of CK740187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
PIP25_MAIZE4.699e-5290.65Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP23_ARATH8.015e-5287.27Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
PIP27_ARATH1.786e-5187.16Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP22_ORYSJ1.786e-5188.79Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP27_MAIZE3.978e-5184.40Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP28_ARATH1.974e-5087.04Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP26_ORYSJ1.974e-5086.24Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP26_MAIZE1.974e-5089.52Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]
PIP25_ORYSJ2.578e-5088.57Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
PIP24_ORYSJ4.398e-5089.52Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6682 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740187 ID=CK740187; Name=CK740187; organism=Citrus sinensis; type=EST; length=493bp
CGTTGGATTGGCCGTCGAGATCATCGGCACCTTTGTGTTGGTTTACACTG
TCTTCTCGGCCACTGATCCCAAGAGAAGCGCCAGAGACTCCCATGTCCCC
GTTTTGGCACCGCTCCCCATTGGATTTGCTGTGTTCATGGTACACTTGGC
CACAATCCCAATCACTGGCACTGGCATTAACCCAGCAAGGAGTCTCGGGG
CCGCTGTTATTTACAACAAGGACAAGGCTTGGGATGATCAATGGCTCTTC
TGGGTTGGACCCTTCATCGGTGCAGCAATTGCGGCTTTCTACCACCAATT
CATCTTGAGAGCTGGAGCTGTCAAGGCTCTTGGTTCATTCAGGAGCCAAT
CCCGTGTCTGATTTTAGTTTCGACAAGTGGATTATCCACATCTTCATGGG
GTTAATGATTTAAAATTGGAAAGAAAAAACTGGGAAGGAGTAGAGGTGTG
TTAAGTTTCAAAAAGTGAATAATGAGGGGGGGGTGGTGATTTG
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