CK740187

Overview
NameCK740187
Unique NameCK740187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length493
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 4.155e-16
Identity = 43/100 (43.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query:    5 GLAVEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 304
            GL VE+I TF LV+T+F++ D KR+     +     L IGF+V + HL  I  TG  +NPARS G AVI      W++ W++WVGP IGA +A   ++++
Sbjct:  159 GLLVELIITFQLVFTIFASCDSKRTDVTGSIA----LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYV 251          
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.155e-16
Identity = 43/100 (43.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query:    5 GLAVEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 304
            GL VE+I TF LV+T+F++ D KR+     +     L IGF+V + HL  I  TG  +NPARS G AVI      W++ W++WVGP IGA +A   ++++
Sbjct:  159 GLLVELIITFQLVFTIFASCDSKRTDVTGSIA----LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYV 251          
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.209e-15
Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = 2
Query:    5 GLAVEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 307
            GL +EII TF LVY V+S A DPKR +    + ++APL IG  V    L   P  G  +NPAR+ G A++  +   W + W++WVGPFIG A+AA  +++++
Sbjct:  152 GLLMEIILTFALVYVVYSTAIDPKRGS----IGIIAPLAIGLIVGANILVGGPFDGASMNPARAFGPALVGWR---WSNHWIYWVGPFIGGALAALIYEYMI 246          
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.209e-15
Identity = 48/101 (47.52%), Postives = 59/101 (58.42%), Query Frame = 2
Query:    5 GLAVEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 307
            GL VEI+ TF LV  V + TD +R      VP    L IG +V + HL  I  TG G+NPARS G+AV+    K +   W+FWVGP IG A AA  + FIL
Sbjct:  142 GLGVEILVTFQLVLCVVAVTDRRRHDVSGSVP----LAIGLSVALGHLIAIDYTGCGMNPARSFGSAVL---TKNFTYHWIFWVGPMIGGAAAAIIYDFIL 235          
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: AQP_HAEIX (Aquaporin OS=Haematobia irritans exigua PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.579e-15
Identity = 39/99 (39.39%), Postives = 59/99 (59.60%), Query Frame = 2
Query:   14 VEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILR 310
            +E + TF+LV  V   +DP R+     +   APL +G ++   HL  I +TG  +NPARS G AV+ N    W D W++WVGP +GA +AA  ++F+ +
Sbjct:  147 IEALITFILVVVVKGVSDPGRT----DIKGSAPLAVGLSIAAGHLCAIKLTGASMNPARSFGPAVVQN---MWIDHWVYWVGPIVGAIVAALLYKFVFK 238          
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.062e-15
Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = 2
Query:    5 GLAVEIIGTFVLVYTVFSAT-DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 307
            GL +EII TF LVY V+S   DPKR +    + ++APL IG  V    L   P +G  +NPAR+ G A++  +   W D W++WVGPFIG+A+AA  +++++
Sbjct:  152 GLVLEIILTFGLVYVVYSTLIDPKRGS----LGIIAPLAIGLIVGANILVGGPFSGASMNPARAFGPALVGWR---WHDHWIYWVGPFIGSALAALIYEYMV 246          
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 2.062e-15
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:    5 GLAVEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 304
            GL VE+I TF LV+T+F++ D KR+     +     L IGF+V + HL  I  TG  +NPARS G AVI      W + W++WVGP +GA +A   ++++
Sbjct:  159 GLLVELIITFQLVFTIFASCDSKRTDVTGSIA----LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WANHWIYWVGPIMGAVLAGALYEYV 251          
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 2.062e-15
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:    5 GLAVEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 304
            GL VE+I TF LV+T+F++ D KR+     +     L IG +V + HL  I  TG  +NPARS G AVI      W++ W++WVGP IGA +A   ++++
Sbjct:  159 GLLVELIITFQLVFTIFASCDSKRTDVTGSIA----LAIGISVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYV 251          
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.746e-14
Identity = 44/101 (43.56%), Postives = 63/101 (62.38%), Query Frame = 2
Query:    8 LAVEIIGTFVLVYTVFSATDPKRSARDSHVPVLAP-LPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 307
            + VE+I TF L   +FS+TD +R++     PV +P L IG +V + HL  I  TG  +NPARS G AV+ N+       W+FWVGP +GAA+AA  + ++L
Sbjct:  132 VVVEMILTFQLALCIFSSTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFS--PSHWVFWVGPIVGAAVAAILYFYLL 225          
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.977e-14
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 2
Query:   17 EIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 304
            EI+ TF LVYTV++ A DPK+      + V+AP+ IGF V    LA     G  +NPA S G AV+      WD+ W++W+GPF+GAAIAA  +  I
Sbjct:  148 EIVMTFGLVYTVYATAVDPKKG----DLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVTG---VWDNHWVYWLGPFVGAAIAALIYDII 237          
The following BLAST results are available for this feature:
BLAST of CK740187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
AQP4_HUMAN4.155e-1643.00Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP4_DIPME4.155e-1643.00Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
TIP32_ARATH1.209e-1543.14Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
AQPA_RANES1.209e-1547.52Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]
AQP_HAEIX1.579e-1539.39Aquaporin OS=Haematobia irritans exigua PE=2 SV=1[more]
TIP31_ARATH2.062e-1543.14Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
AQP4_MOUSE2.062e-1542.00Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
AQP4_BOVIN2.062e-1542.00Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
AQP5_PIG1.746e-1443.56Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]
TIP12_ORYSJ2.977e-1445.36Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6682 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740187 ID=CK740187; Name=CK740187; organism=Citrus sinensis; type=EST; length=493bp
CGTTGGATTGGCCGTCGAGATCATCGGCACCTTTGTGTTGGTTTACACTG
TCTTCTCGGCCACTGATCCCAAGAGAAGCGCCAGAGACTCCCATGTCCCC
GTTTTGGCACCGCTCCCCATTGGATTTGCTGTGTTCATGGTACACTTGGC
CACAATCCCAATCACTGGCACTGGCATTAACCCAGCAAGGAGTCTCGGGG
CCGCTGTTATTTACAACAAGGACAAGGCTTGGGATGATCAATGGCTCTTC
TGGGTTGGACCCTTCATCGGTGCAGCAATTGCGGCTTTCTACCACCAATT
CATCTTGAGAGCTGGAGCTGTCAAGGCTCTTGGTTCATTCAGGAGCCAAT
CCCGTGTCTGATTTTAGTTTCGACAAGTGGATTATCCACATCTTCATGGG
GTTAATGATTTAAAATTGGAAAGAAAAAACTGGGAAGGAGTAGAGGTGTG
TTAAGTTTCAAAAAGTGAATAATGAGGGGGGGGTGGTGATTTG
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