CK740187

Overview
NameCK740187
Unique NameCK740187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length493
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.578e-13
Identity = 40/98 (40.82%), Postives = 58/98 (59.18%), Query Frame = 2
Query:    5 GLAVEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYH 295
            G+ +EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARS G AV+          W++WVGP +G A+A   +
Sbjct:  142 GVVMEIVVTFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGD---LSQIWIYWVGPLVGGALAGLIY 232          
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.578e-13
Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query:    8 LAVEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 307
            + VE+  T  LV  +F++TD +R            L IGF+V + HL  I  TG  +NPARSL  AV+  K   +DD W+FW+GP +GA I +  + ++L
Sbjct:  131 VTVELFLTMQLVLCIFASTDERRGDNLGS----PALSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGK---FDDHWVFWIGPLVGAIIGSLLYNYLL 223          
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.251e-12
Identity = 43/97 (44.33%), Postives = 56/97 (57.73%), Query Frame = 2
Query:   17 EIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 304
            EI+ TF LVYTV++ A DPK+      + ++APL IG  V    L      G  +NPA S G AV+      W + W++WVGPFIGAAIAA  +  I
Sbjct:  148 EIVMTFGLVYTVYATAVDPKKG----DIGIIAPLAIGLIVGANILVGGAFDGASMNPAVSFGPAVV---SWIWTNHWVYWVGPFIGAAIAAIVYDTI 237          
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: AQPZ_SYNY3 (Aquaporin Z OS=Synechocystis sp. (strain PCC 6803) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.251e-12
Identity = 36/100 (36.00%), Postives = 51/100 (51.00%), Query Frame = 2
Query:    8 LAVEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 307
            L +E + TF+ +  +   TD    A        AP  IG A+ ++HL +IPIT T +NPARS G A+           WLFW+ P  GA +A F +  +L
Sbjct:  143 LLIEFVLTFIFLIVILGVTDKTAPAG------FAPAAIGLALTLIHLISIPITNTSVNPARSTGVALFCGNPALIGQLWLFWLAPIAGALLAGFVYHNVL 236          
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.634e-12
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = 2
Query:    5 GLAVEIIGTFVLVYTVFSA-TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 307
            G+  EII TF L++TV++   DPK+ + D   P+L     GF V    LA    +G  +NPARS G A++      W D W++WVGP IG  +A F ++ +L
Sbjct:  138 GIIWEIILTFSLLFTVYATIVDPKKGSLDGFGPLLT----GFVVGANILAGGAFSGASMNPARSFGPALVSGN---WTDHWVYWVGPLIGGGLAGFIYENVL 232          
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.634e-12
Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:    8 LAVEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 304
            L +EI+ TF LVYTV++ A DPK+     ++ ++AP+ IGF V    L     TG  +NPA S G AV+     +W + W++W GP IG  IA   ++ +
Sbjct:  144 LVLEIVMTFGLVYTVYATAVDPKKG----NIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVV---SWSWSNHWVYWAGPLIGGGIAGLVYEVL 236          
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.634e-12
Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:    8 LAVEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFI 304
            L +EI+ TF LVYTV++ A DPK+     ++ ++AP+ IGF V    L     TG  +NPA S G AV+     +W + W++W GP IG  IA   ++ +
Sbjct:  143 LVLEIVMTFGLVYTVYATAVDPKKG----NIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVV---SWSWSNHWVYWAGPLIGGGIAGLVYEVL 235          
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: AQP_DROME (Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.134e-12
Identity = 35/99 (35.35%), Postives = 54/99 (54.55%), Query Frame = 2
Query:   14 VEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILR 310
            +E + TF+LV+ V + +DP R      +   APL +G A+   HL  I ++G  +NPARS G AV+      W   W++WVGP  G  +A   ++ I +
Sbjct:  141 IEALITFILVFVVKAVSDPGRQ----DIKGSAPLAVGLAIAAGHLCAIKLSGASMNPARSFGPAVVQG---VWTYHWVYWVGPIAGGLLAGIIYRLIFK 232          
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: AQP_ANOGA (Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP008842 PE=3 SV=4)

HSP 1 Score: 71.633 bits (174), Expect = 2.134e-12
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = 2
Query:    5 GLAVEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIA-AFYHQF 301
            G+ +E + TF+LV+ V    D +R+     V   APL IG ++   HLA I  TG  +NPARS G AV+      + D W++WVGP +G  +A A Y  F
Sbjct:  143 GVLIEALITFMLVFVVHGVCDNRRT----DVKGSAPLAIGLSITAGHLAAIKYTGASMNPARSFGPAVVMGN---YTDLWVYWVGPIVGGIVAGAVYRLF 235          
BLAST of CK740187 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUAB (Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.134e-12
Identity = 38/101 (37.62%), Postives = 55/101 (54.46%), Query Frame = 2
Query:    5 GLAVEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFIL 307
            GL +EII T   +  +  +T     A        AP+ IGF + ++HL +IP+T T +NPARS G A+  ++  A    WLFWV P +GA I A   + +L
Sbjct:  132 GLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTSVNPARSTGVALFADR-AALSQLWLFWVAPLVGAVIGAIIWKGLL 225          
The following BLAST results are available for this feature:
BLAST of CK740187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
TIP23_ARATH9.578e-1340.82Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
AQP2_RAT9.578e-1339.00Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]
TIP13_ARATH1.251e-1244.33Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
AQPZ_SYNY31.251e-1236.00Aquaporin Z OS=Synechocystis sp. (strain PCC 6803)... [more]
TIP41_ARATH1.634e-1239.22Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
TIP1_MEDTR1.634e-1239.00Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP1_MEDSA1.634e-1239.00Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
AQP_DROME2.134e-1235.35Aquaporin OS=Drosophila melanogaster GN=Drip PE=1 ... [more]
AQP_ANOGA2.134e-1240.00Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP0088... [more]
AQPZ_BRUAB2.134e-1237.62Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6682 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740187 ID=CK740187; Name=CK740187; organism=Citrus sinensis; type=EST; length=493bp
CGTTGGATTGGCCGTCGAGATCATCGGCACCTTTGTGTTGGTTTACACTG
TCTTCTCGGCCACTGATCCCAAGAGAAGCGCCAGAGACTCCCATGTCCCC
GTTTTGGCACCGCTCCCCATTGGATTTGCTGTGTTCATGGTACACTTGGC
CACAATCCCAATCACTGGCACTGGCATTAACCCAGCAAGGAGTCTCGGGG
CCGCTGTTATTTACAACAAGGACAAGGCTTGGGATGATCAATGGCTCTTC
TGGGTTGGACCCTTCATCGGTGCAGCAATTGCGGCTTTCTACCACCAATT
CATCTTGAGAGCTGGAGCTGTCAAGGCTCTTGGTTCATTCAGGAGCCAAT
CCCGTGTCTGATTTTAGTTTCGACAAGTGGATTATCCACATCTTCATGGG
GTTAATGATTTAAAATTGGAAAGAAAAAACTGGGAAGGAGTAGAGGTGTG
TTAAGTTTCAAAAAGTGAATAATGAGGGGGGGGTGGTGATTTG
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