CK740194

Overview
NameCK740194
Unique NameCK740194
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 2.639e-74
Identity = 132/137 (96.35%), Postives = 136/137 (99.27%), Query Frame = 3 
Query:  141 VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 551
            VWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  129 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

HSP 2 Score: 103.219 bits (256), Expect = 8.908e-22
Identity = 51/67 (76.12%), Postives = 52/67 (77.61%), Query Frame = 2 
Query:    2 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEARVVQGGGPDLQRGRA*LLGEP 202
            GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA   + G      G    LG P
Sbjct:   83 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 149
[Close]
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 2.639e-74
Identity = 131/137 (95.62%), Postives = 136/137 (99.27%), Query Frame = 3 
Query:  141 VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 551
            VWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  130 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266

HSP 2 Score: 103.219 bits (256), Expect = 8.908e-22
Identity = 51/67 (76.12%), Postives = 52/67 (77.61%), Query Frame = 2 
Query:    2 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEARVVQGGGPDLQRGRA*LLGEP 202
            GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA   + G      G    LG P
Sbjct:   84 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 150
[Close]
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 2.639e-74
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 3 
Query:  141 VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 548
            VWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPG
Sbjct:  126 VWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261

HSP 2 Score: 98.2117 bits (243), Expect = 2.865e-20
Identity = 49/67 (73.13%), Postives = 51/67 (76.12%), Query Frame = 2 
Query:    2 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEARVVQGGGPDLQRGRA*LLGEP 202
            GLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEA   + G      G    LG P
Sbjct:   80 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 146
[Close]
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 277.33 bits (708), Expect = 3.446e-74
Identity = 134/137 (97.81%), Postives = 135/137 (98.54%), Query Frame = 3 
Query:  141 VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 551
            VWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  125 VWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261

HSP 2 Score: 99.3673 bits (246), Expect = 1.286e-20
Identity = 50/67 (74.63%), Postives = 51/67 (76.12%), Query Frame = 2 
Query:    2 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEARVVQGGGPDLQRGRA*LLGEP 202
            GLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA   + G      G    LG P
Sbjct:   79 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 145
[Close]
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 5.879e-74
Identity = 131/137 (95.62%), Postives = 135/137 (98.54%), Query Frame = 3 
Query:  141 VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 551
            VWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct:  131 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267

HSP 2 Score: 103.219 bits (256), Expect = 8.908e-22
Identity = 51/67 (76.12%), Postives = 52/67 (77.61%), Query Frame = 2 
Query:    2 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEARVVQGGGPDLQRGRA*LLGEP 202
            GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA   + G      G    LG P
Sbjct:   85 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 151
[Close]
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 7.678e-74
Identity = 129/137 (94.16%), Postives = 136/137 (99.27%), Query Frame = 3 
Query:  141 VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 551
            VWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGA+EGYR+AGGPLGEV DPLYPGG+FDPLGLADDPEAFA++KVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  129 VWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

HSP 2 Score: 99.3673 bits (246), Expect = 1.286e-20
Identity = 50/67 (74.63%), Postives = 51/67 (76.12%), Query Frame = 2 
Query:    2 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEARVVQGGGPDLQRGRA*LLGEP 202
            GLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA   + G      G    LG P
Sbjct:   83 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 149
[Close]
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 276.174 bits (705), Expect = 7.678e-74
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 3 
Query:  141 VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 551
            VWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QVVLMGAVEGYRIAGGPLGEV DPLYPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  129 VWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

HSP 2 Score: 99.3673 bits (246), Expect = 1.286e-20
Identity = 50/67 (74.63%), Postives = 51/67 (76.12%), Query Frame = 2 
Query:    2 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEARVVQGGGPDLQRGRA*LLGEP 202
            GLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA   + G      G    LG P
Sbjct:   83 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 149
[Close]
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.003e-73
Identity = 128/137 (93.43%), Postives = 136/137 (99.27%), Query Frame = 3 
Query:  141 VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 551
            VWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMGA+EGYR+AGGPLGEVTDP+YPGG+FDPLGLADDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  142 VWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278

HSP 2 Score: 99.7525 bits (247), Expect = 9.848e-21
Identity = 50/68 (73.53%), Postives = 52/68 (76.47%), Query Frame = 2 
Query:    2 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEARVVQGGGPDLQRGRA*LLGEPK 205
            GLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA   + G      G    LG P+
Sbjct:   96 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQ 163
[Close]
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.003e-73
Identity = 130/137 (94.89%), Postives = 135/137 (98.54%), Query Frame = 3 
Query:  141 VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 551
            VWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVK IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  131 VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

HSP 2 Score: 103.219 bits (256), Expect = 8.908e-22
Identity = 51/67 (76.12%), Postives = 52/67 (77.61%), Query Frame = 2 
Query:    2 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEARVVQGGGPDLQRGRA*LLGEP 202
            GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA   + G      G    LG P
Sbjct:   85 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 151
[Close]
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 1.310e-73
Identity = 130/137 (94.89%), Postives = 135/137 (98.54%), Query Frame = 3 
Query:  141 VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 551
            VWFKAG+QIF EGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADDPEAFAEL+VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  130 VWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266

HSP 2 Score: 96.6709 bits (239), Expect = 8.337e-20
Identity = 47/67 (70.15%), Postives = 50/67 (74.63%), Query Frame = 2 
Query:    2 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEARVVQGGGPDLQRGRA*LLGEP 202
            GLSADP TFAKNR+LEVIHCRW MLGALGCVFPEL ARNGVKFGEA   + G    + G    LG P
Sbjct:   84 GLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNP 150
The following BLAST results are available for this feature:
BLAST of CK740194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
CB2B_SOLLC2.639e-7496.35Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB21_TOBAC2.639e-7495.62Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB21_MAIZE2.639e-7497.06Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_ORYSJ3.446e-7497.81Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2A_SPIOL5.879e-7495.62Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB29_MAIZE7.678e-7494.16Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB21_ORYSJ7.678e-7497.08Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2A_PINSY1.003e-7393.43Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB25_TOBAC1.003e-7394.89Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB21_PETSP1.310e-7394.89Chlorophyll a-b binding protein 13, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6689 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740194 ID=CK740194; Name=CK740194; organism=Citrus sinensis; type=EST; length=560bp
TGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAG
TCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCG
GAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCCGTGTGGTTCA
AGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAAC
CCAAGCCTGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCCAGGT
GGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCG
GTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGT
TTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAA
GAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCA
TTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGAC
CCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAA
GTGAGCTTCG
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