CK740194

Overview
NameCK740194
Unique NameCK740194
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:340..898. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.204e-18
Identity = 41/69 (59.42%), Postives = 54/69 (78.26%), Query Frame = 3
Query:  312 DPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 515
            +P YPGG F +PLG   D ++  ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPVNNN
Sbjct:  199 NPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.503e-18
Identity = 57/126 (45.24%), Postives = 71/126 (56.35%), Query Frame = 3
Query:  144 WFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 515
            W KA       +G   YLGNP  +   ++  I A + + +   E  R       +     YPGG+FDPLG + DP  F ELK+KEIKNGRLAM +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  112 WVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTMEK---DPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.975e-18
Identity = 58/126 (46.03%), Postives = 72/126 (57.14%), Query Frame = 3
Query:  144 WFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 515
            W KA       GG   YLG P  +   ++  I A + + +  VE  R       +     YPGG+FDPLG + DP  F ELKVKEIKNGRLA+ ++ GF V Q+   G GPLENLA HLADP +NN
Sbjct:  113 WVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQRSMEK---DSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.058e-17
Identity = 55/123 (44.72%), Postives = 73/123 (59.35%), Query Frame = 3
Query:  144 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 509
            W  AG     +G   YLG P      +++ I   +V+++G +E  R A     +    LYPGG F DPLGLA DPE  A+L++ EIK+ RLAM +  GF VQA  TGKGPL N A HL+DP++
Sbjct:  165 WQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 280          
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 54/123 (43.90%), Postives = 71/123 (57.72%), Query Frame = 3
Query:  144 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 509
            W  AG     +G   YLG P      +++ I   +V+++G +E  R A     +    LYPGG F DPLGLA DP   A+L++ EIK+ RLAM    GF VQA  TGKGPL N A HL+DP++
Sbjct:  162 WQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLH 277          
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 3.984e-16
Identity = 47/113 (41.59%), Postives = 59/113 (52.21%), Query Frame = 3
Query:  186 DYLGNPSLIHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVTDP--LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 515
            DYLG      A     I   +V +  A  G + +A G + E +DP  +YPG  FDPL L  D       K  EIKNGRLA+ ++ GF VQ  V G  PL NLA+HL  P+  N
Sbjct:   62 DYLGKGIWYEAAQNAGIGLKEVAIFTAAYGVFEVARG-VKENSDPTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPLQRN 166          

HSP 2 Score: 57.7658 bits (138), Expect = 3.984e-16
Identity = 43/89 (48.31%), Postives = 49/89 (55.06%), Query Frame = 3
Query:  231 AIWACQVVLMGAVEGYRIAGGPLG---EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 488
            A+ A QVV    +E +R  GG L    E  D  YPG  FDPL L  +       K  EIKNGRLAM  MFG  VQ+ VTGK P+ NL D
Sbjct:  451 AVVALQVV--APLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMNGMFGLEVQSHVTGKSPINNLID 530          

HSP 3 Score: 47.3654 bits (111), Expect = 3.984e-16
Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 2
Query:    2 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 130
            GL+ADP TF + +  EV HCR +ML  +GC+ PELL  NG  F
Sbjct:  398 GLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLG-NGAWF 439          

HSP 4 Score: 39.6614 bits (91), Expect = 3.984e-16
Identity = 18/38 (47.37%), Postives = 25/38 (65.79%), Query Frame = 2
Query:    2 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 115
            GL+ADP+TF + R  EV H R AML  +G + P+ L +
Sbjct:   29 GLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYLGK 66          
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 5.264e-16
Identity = 47/97 (48.45%), Postives = 58/97 (59.79%), Query Frame = 3
Query:  234 IWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 512
            IW  +V+L+G  E YR         T+P    YPGG FDPL LA +D E    LK  EIK+ RLAM S FG+ VQA+ TG+G L +LA   AD +NN
Sbjct:  188 IWI-EVILVGGAEFYR------NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA-KFADGLNN 276          

HSP 2 Score: 35.4242 bits (80), Expect = 5.264e-16
Identity = 21/44 (47.73%), Postives = 26/44 (59.09%), Query Frame = 2
Query:   29 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEARVVQGGG 160
            A+ RE E+IH RWAML  LG +  E  A  GV + EA  V+  G
Sbjct:  131 ARFRECELIHGRWAMLACLGALVAE--ATTGVSWVEAGKVELDG 172          
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.871e-13
Identity = 41/73 (56.16%), Postives = 46/73 (63.01%), Query Frame = 3
Query:  294 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 512
            P GEV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  HL+DP +N
Sbjct:  179 PKGEVG---YPGGIFNPLNFAPTQEA----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 244          
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.289e-12
Identity = 49/117 (41.88%), Postives = 63/117 (53.85%), Query Frame = 3
Query:  144 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 485
            W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG FDPLGLA DPE    LK+ EIK+ RLAM +   F +QA  TGKGP+  LA
Sbjct:  166 WQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVLVVGYIEFQR------NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLA 272          
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.872e-12
Identity = 39/73 (53.42%), Postives = 46/73 (63.01%), Query Frame = 3
Query:  294 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 512
            P GEV    YPGG F+PL  A   EA    K KEI NGRLAM +  GF +Q  VTGKGP +NL  H++DP +N
Sbjct:  178 PAGEVG---YPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHN 243          
The following BLAST results are available for this feature:
BLAST of CK740194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
CB23_PEA1.204e-1859.42Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB121_HORVU3.503e-1845.24Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC5.975e-1846.03Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB4A_ARATH5.058e-1744.72Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH3.278e-1643.90Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
LH18_EUGGR3.984e-1641.59Light-harvesting complex I LH38 proteins (Fragment... [more]
CB29_CHLRE5.264e-1648.45Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB24_ARATH9.871e-1356.16Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB4C_ARATH1.289e-1241.88Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB24_PEA2.872e-1253.42Chlorophyll a-b binding protein P4, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6689 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740194 ID=CK740194; Name=CK740194; organism=Citrus sinensis; type=EST; length=560bp
TGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAG
TCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCG
GAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCCGTGTGGTTCA
AGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAAC
CCAAGCCTGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCCAGGT
GGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCG
GTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGT
TTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAA
GAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCA
TTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGAC
CCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAA
GTGAGCTTCG
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