CK740194
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.204e-18 Identity = 41/69 (59.42%), Postives = 54/69 (78.26%), Query Frame = 3 Query: 312 DPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 515 +P YPGG F +PLG D ++ ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPVNNN Sbjct: 199 NPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 3.503e-18 Identity = 57/126 (45.24%), Postives = 71/126 (56.35%), Query Frame = 3 Query: 144 WFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 515 W KA +G YLGNP + ++ I A + + + E R + YPGG+FDPLG + DP F ELK+KEIKNGRLAM + GF V Q+ G GPLENLA HLADP +NN Sbjct: 112 WVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTMEK---DPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 5.975e-18 Identity = 58/126 (46.03%), Postives = 72/126 (57.14%), Query Frame = 3 Query: 144 WFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 515 W KA GG YLG P + ++ I A + + + VE R + YPGG+FDPLG + DP F ELKVKEIKNGRLA+ ++ GF V Q+ G GPLENLA HLADP +NN Sbjct: 113 WVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQRSMEK---DSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 5.058e-17 Identity = 55/123 (44.72%), Postives = 73/123 (59.35%), Query Frame = 3 Query: 144 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 509 W AG +G YLG P +++ I +V+++G +E R A + LYPGG F DPLGLA DPE A+L++ EIK+ RLAM + GF VQA TGKGPL N A HL+DP++ Sbjct: 165 WQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 280
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16 Identity = 54/123 (43.90%), Postives = 71/123 (57.72%), Query Frame = 3 Query: 144 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 509 W AG +G YLG P +++ I +V+++G +E R A + LYPGG F DPLGLA DP A+L++ EIK+ RLAM GF VQA TGKGPL N A HL+DP++ Sbjct: 162 WQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLH 277
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 3.984e-16 Identity = 47/113 (41.59%), Postives = 59/113 (52.21%), Query Frame = 3 Query: 186 DYLGNPSLIHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVTDP--LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 515 DYLG A I +V + A G + +A G + E +DP +YPG FDPL L D K EIKNGRLA+ ++ GF VQ V G PL NLA+HL P+ N Sbjct: 62 DYLGKGIWYEAAQNAGIGLKEVAIFTAAYGVFEVARG-VKENSDPTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPLQRN 166 HSP 2 Score: 57.7658 bits (138), Expect = 3.984e-16 Identity = 43/89 (48.31%), Postives = 49/89 (55.06%), Query Frame = 3 Query: 231 AIWACQVVLMGAVEGYRIAGGPLG---EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 488 A+ A QVV +E +R GG L E D YPG FDPL L + K EIKNGRLAM MFG VQ+ VTGK P+ NL D Sbjct: 451 AVVALQVV--APLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMNGMFGLEVQSHVTGKSPINNLID 530 HSP 3 Score: 47.3654 bits (111), Expect = 3.984e-16 Identity = 23/43 (53.49%), Postives = 29/43 (67.44%), Query Frame = 2 Query: 2 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 130 GL+ADP TF + + EV HCR +ML +GC+ PELL NG F Sbjct: 398 GLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLG-NGAWF 439 HSP 4 Score: 39.6614 bits (91), Expect = 3.984e-16 Identity = 18/38 (47.37%), Postives = 25/38 (65.79%), Query Frame = 2 Query: 2 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 115 GL+ADP+TF + R EV H R AML +G + P+ L + Sbjct: 29 GLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYLGK 66
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 5.264e-16 Identity = 47/97 (48.45%), Postives = 58/97 (59.79%), Query Frame = 3 Query: 234 IWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 512 IW +V+L+G E YR T+P YPGG FDPL LA +D E LK EIK+ RLAM S FG+ VQA+ TG+G L +LA AD +NN Sbjct: 188 IWI-EVILVGGAEFYR------NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA-KFADGLNN 276 HSP 2 Score: 35.4242 bits (80), Expect = 5.264e-16 Identity = 21/44 (47.73%), Postives = 26/44 (59.09%), Query Frame = 2 Query: 29 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEARVVQGGG 160 A+ RE E+IH RWAML LG + E A GV + EA V+ G Sbjct: 131 ARFRECELIHGRWAMLACLGALVAE--ATTGVSWVEAGKVELDG 172
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 9.871e-13 Identity = 41/73 (56.16%), Postives = 46/73 (63.01%), Query Frame = 3 Query: 294 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 512 P GEV YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL HL+DP +N Sbjct: 179 PKGEVG---YPGGIFNPLNFAPTQEA----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 244
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.289e-12 Identity = 49/117 (41.88%), Postives = 63/117 (53.85%), Query Frame = 3 Query: 144 WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 485 W AG EG YLG P +++ I +V+++G +E R DP +YPGG FDPLGLA DPE LK+ EIK+ RLAM + F +QA TGKGP+ LA Sbjct: 166 WQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVLVVGYIEFQR------NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLA 272
BLAST of CK740194 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 2.872e-12 Identity = 39/73 (53.42%), Postives = 46/73 (63.01%), Query Frame = 3 Query: 294 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 512 P GEV YPGG F+PL A EA K KEI NGRLAM + GF +Q VTGKGP +NL H++DP +N Sbjct: 178 PAGEVG---YPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHN 243 The following BLAST results are available for this feature:
BLAST of CK740194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 80
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Sequences
The
following sequences are available for this feature:
EST sequence >CK740194 ID=CK740194; Name=CK740194; organism=Citrus sinensis; type=EST; length=560bpback to top |