CK740203

Overview
NameCK740203
Unique NameCK740203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length470
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740203 vs. ExPASy Swiss-Prot
Match: H31_CHLRE (Histone H3 type 1 OS=Chlamydomonas reinhardtii GN=ch3-I PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.204e-43
Identity = 92/113 (81.42%), Postives = 95/113 (84.07%), Query Frame = 3
Query:    3 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 341
            KAARK+ PATGGVKKPHR+RPGTVALREIRKYQKSTEL+IRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   24 KAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELVIRKLPFQRLVREIAQDFKTDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135          
BLAST of CK740203 vs. ExPASy Swiss-Prot
Match: H33_CHLRE (Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=ch3-IV PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 7.804e-43
Identity = 92/113 (81.42%), Postives = 94/113 (83.19%), Query Frame = 3
Query:    3 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 341
            KAARK+ PATGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAI AKRVTIMPKDIQLARRIRGERA
Sbjct:   24 KAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSQAVVALQEAAEAYLVGLFEDTNLCAITAKRVTIMPKDIQLARRIRGERA 135          
BLAST of CK740203 vs. ExPASy Swiss-Prot
Match: H31_SCHPO (Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=hht1 PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 7.804e-43
Identity = 87/113 (76.99%), Postives = 93/113 (82.30%), Query Frame = 3
Query:    3 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 341
            KAARK+APATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                  LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct:   24 KAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136          
BLAST of CK740203 vs. ExPASy Swiss-Prot
Match: H31_LODEL (Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=HHT1 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.331e-42
Identity = 87/113 (76.99%), Postives = 94/113 (83.19%), Query Frame = 3
Query:    3 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 341
            KAARKSAP+TGGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:   24 KAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136          
BLAST of CK740203 vs. ExPASy Swiss-Prot
Match: H32_CICIN (Histone H3.2 OS=Cichorium intybus PE=2 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 1.738e-42
Identity = 90/113 (79.65%), Postives = 91/113 (80.53%), Query Frame = 3
Query:    3 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 341
            KA    A ATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct:   24 KAWNTLATATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGERA 136          
BLAST of CK740203 vs. ExPASy Swiss-Prot
Match: H3_MORAP (Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 2.965e-42
Identity = 88/112 (78.57%), Postives = 91/112 (81.25%), Query Frame = 3
Query:    3 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 338
            KAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                  LFEDTNL AIHAKRVTI PKDI LARR+RGER
Sbjct:   24 KAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEASEAYLVSLFEDTNLAAIHAKRVTIQPKDIHLARRLRGER 135          
BLAST of CK740203 vs. ExPASy Swiss-Prot
Match: H31_CANAL (Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 2.965e-42
Identity = 86/113 (76.11%), Postives = 94/113 (83.19%), Query Frame = 3
Query:    3 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 341
            KAARKSAP+TGGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTI  KD+QLARR+RGER+
Sbjct:   24 KAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDMQLARRLRGERS 136          
BLAST of CK740203 vs. ExPASy Swiss-Prot
Match: H33_SCHPO (Histone H3.3 OS=Schizosaccharomyces pombe GN=hht3 PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 6.606e-42
Identity = 86/113 (76.11%), Postives = 92/113 (81.42%), Query Frame = 3
Query:    3 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 341
            KAARK+APATGGVKKPHR+RP TVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                  LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct:   24 KAARKAAPATGGVKKPHRYRPPTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136          
BLAST of CK740203 vs. ExPASy Swiss-Prot
Match: H33L2_CAEEL (Histone H3.3-like type 2 OS=Caenorhabditis elegans GN=his-74 PE=2 SV=3)

HSP 1 Score: 169.474 bits (428), Expect = 6.606e-42
Identity = 88/113 (77.88%), Postives = 92/113 (81.42%), Query Frame = 3
Query:    3 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 341
            KAARKSA  TG VKK HRFRPGTVALREIR+YQKSTELL+RKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKD+QLARRIRGER+
Sbjct:   24 KAARKSAIVTGSVKKVHRFRPGTVALREIRRYQKSTELLLRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGERS 136          
BLAST of CK740203 vs. ExPASy Swiss-Prot
Match: H31_PICST (Histone H3.1/H3.2 OS=Pichia stipitis GN=HHT1 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 6.606e-42
Identity = 86/113 (76.11%), Postives = 93/113 (82.30%), Query Frame = 3
Query:    3 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 341
            KAARKSAP+TGGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRF                  LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:   24 KAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136          
The following BLAST results are available for this feature:
BLAST of CK740203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
H31_CHLRE1.204e-4381.42Histone H3 type 1 OS=Chlamydomonas reinhardtii GN=... [more]
H33_CHLRE7.804e-4381.42Histone H3 type 3 OS=Chlamydomonas reinhardtii GN=... [more]
H31_SCHPO7.804e-4376.99Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=... [more]
H31_LODEL1.331e-4276.99Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=... [more]
H32_CICIN1.738e-4279.65Histone H3.2 OS=Cichorium intybus PE=2 SV=3[more]
H3_MORAP2.965e-4278.57Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3[more]
H31_CANAL2.965e-4276.11Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3... [more]
H33_SCHPO6.606e-4276.11Histone H3.3 OS=Schizosaccharomyces pombe GN=hht3 ... [more]
H33L2_CAEEL6.606e-4277.88Histone H3.3-like type 2 OS=Caenorhabditis elegans... [more]
H31_PICST6.606e-4276.11Histone H3.1/H3.2 OS=Pichia stipitis GN=HHT1 PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6698 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740203 ID=CK740203; Name=CK740203; organism=Citrus sinensis; type=EST; length=470bp
CAAAGGCGGCTCGGAAGTCGGCGCCAGCGACGGGAGGAGTGAAGAAGCCT
CACCGTTTTAGGCCAGGAACCGTGGCTTTAAGAGAAATTAGGAAGTACCA
GAAGAGCACTGAGCTTTTGATAAGGAAGCTTCCGTTCCAGAGGCTCGTGA
GAGAAATCGCTCAGGATTTTAAGACCGATCTGAGGTTCCAGAGCAGCGCC
GTTGCGGCTCTTCAAGAAGCTGCTGAGGCTTATCTTGTGGGTCTCTTTGA
AGATACCAATCTCTGCGCCATTCATGCTAAGAGGGTCACTATCATGCCCA
AAGATATTCAGCTTGCTAGGAGGATCAGAGGAGAGAGAGCTTAGTCGATT
AATTGATTTGTATCTAGATCTGATTTGGCTTTTAGCGTTTCAGTTTCTAA
GAAATGGGTATGCAAGATTGTTTTGGAATGTAATGGAAAGTTTGAATCTA
TTGTTACATTTGTTGGGTTT
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