CK740205 | Citrus Genome Database

Overview


Name	CK740205
Unique Name	CK740205
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	679

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 3.859e-52
Identity = 93/167 (55.69%), Postives = 120/167 (71.86%), Query Frame = 2

Query:   92 GNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKL-----TDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGT 577
            G   E   PD++RA +AEF S  +FVFA +GS ++  KL        G  TP GL+  ++AHAFALF AVS   N+SGGHVNPAVTFGA VGG +T +R+I YWIAQLLG+++ACLLL+ +T G+    F L+SGVGA N +V EI++TFGLVY VY+T +DPKRG+
Sbjct:   12 GRADEATHPDSIRATLAEFLSTFVFVFAAEGSILSLDKLYWEHAAHAGTNTPGGLILVALAHAFALFAAVSAAINVSGGHVNPAVTFGALVGGRVTAIRAIYYWIAQLLGAILACLLLRLTTNGMRPVGFRLASGVGAVNGLVLEIILTFGLVYVVYSTLIDPKRGS 178

HSP 2 Score: 33.4982 bits (75), Expect = 3.859e-52
Identity = 17/39 (43.59%), Postives = 19/39 (48.72%), Query Frame = 1

Query:  562 PKEGNXXXXXXXXXXXXXXXNILAGGAFDGASMNPAVSF 678
            PK G+               NIL GG F GASMNPA +F
Sbjct:  174 PKRGSLGIIAPLAIGLIVGANILVGGPFSGASMNPARAF 212

[Close]

BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.114e-51
Identity = 91/162 (56.17%), Postives = 121/162 (74.69%), Query Frame = 2

Query:   89 IGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRG 574
            +G   +   PD +RAA++EF +  IFVFA +GS ++  K+  +  +T  GLV+ ++AHA AL VAV+V  NISGGHVNPAVTFGA VGG ++ VR++LYW+AQLLG+V A LLL+ +TGG+    FAL+SGVG W+AV+ E VMTFGL+Y  YAT +DPKRG
Sbjct:   13 VGRSEDATHPDTIRAAISEFIATAIFVFAAEGSVLSLGKMYHD-MSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLRLATGGMRPPGFALASGVGDWHAVLLEAVMTFGLMYAYYATVIDPKRG 173

HSP 2 Score: 34.2686 bits (77), Expect = 1.114e-51
Identity = 17/39 (43.59%), Postives = 19/39 (48.72%), Query Frame = 1

Query:  562 PKEGNXXXXXXXXXXXXXXXNILAGGAFDGASMNPAVSF 678
            PK G+               N+LAGG FDGA MNPA  F
Sbjct:  170 PKRGHVGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVF 208

[Close]

BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 1.453e-51
Identity = 90/162 (55.56%), Postives = 121/162 (74.69%), Query Frame = 2

Query:   89 IGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRG 574
            +G   +   PD +RAA++EF +  IFVFA +GS ++  KL  +  +TP GLV+ S+AHA AL VAV+V  NISGGHVNPA+TFGA +GG ++ +R++ YW+AQLLG+VVA LLL+ +TGG+    FAL+SGVG W+AV+ E  MTFGL+Y  YAT +DPKRG
Sbjct:   14 VGRSEDATHPDTIRAAISEFLATAIFVFAAEGSILSLGKLYQD-MSTPGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLRLTTGGMRPPGFALASGVGDWHAVLLEATMTFGLMYAYYATVIDPKRG 174

HSP 2 Score: 33.4982 bits (75), Expect = 1.453e-51
Identity = 17/39 (43.59%), Postives = 19/39 (48.72%), Query Frame = 1

Query:  562 PKEGNXXXXXXXXXXXXXXXNILAGGAFDGASMNPAVSF 678
            PK G+               N+LAGG FDGA MNPA  F
Sbjct:  171 PKRGHVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVF 209

[Close]

BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 1.895e-51
Identity = 94/165 (56.97%), Postives = 121/165 (73.33%), Query Frame = 2

Query:   83 IAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGT 577
            IA G+  +     +L+A VAEF + ++FVFAG GS +AY+KLT + A  PAGLV+ ++AHAFALFV VS+ ANISGGH+NPAVT G  VGG+IT +    YWIAQLLGS VACLLLK+ T GL      +++G+  +  VV EI++TF LVYTVYATA DPK+G+
Sbjct:    4 IAFGSIGDSFSVGSLKAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHGVAAGLNGFQGVVMEIIITFALVYTVYATAADPKKGS 168

HSP 2 Score: 32.7278 bits (73), Expect = 1.895e-51
Identity = 17/39 (43.59%), Postives = 19/39 (48.72%), Query Frame = 1

Query:  562 PKEGNXXXXXXXXXXXXXXXNILAGGAFDGASMNPAVSF 678
            PK+G+               NILA G F G SMNPA SF
Sbjct:  164 PKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSF 202

[Close]

BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.470e-51
Identity = 94/168 (55.95%), Postives = 122/168 (72.62%), Query Frame = 2

Query:   74 MPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGT 577
            M  I +G+  +     +L+A ++EF + ++FVFAG GS +A++KLT +GA  PAGLV+ +IAHAFALFV VS+ ANISGGH+NPAVT G  +GG+IT +    YWIAQ LGS+VACLLL F T G       +S+G+GA   VV EIV+TF LVYTVYATA DPK+G+
Sbjct:    1 MVKIEVGSVGDSFSVSSLKAYLSEFIATLLFVFAGVGSAVAFAKLTSDGALDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSIVACLLLVFVTNGKSVPTHGVSAGLGAVEGVVMEIVVTFALVYTVYATAADPKKGS 168

HSP 2 Score: 32.7278 bits (73), Expect = 2.470e-51
Identity = 17/39 (43.59%), Postives = 19/39 (48.72%), Query Frame = 1

Query:  562 PKEGNXXXXXXXXXXXXXXXNILAGGAFDGASMNPAVSF 678
            PK+G+               NILA G F G SMNPA SF
Sbjct:  164 PKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSF 202

[Close]

BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 3.219e-51
Identity = 95/168 (56.55%), Postives = 121/168 (72.02%), Query Frame = 2

Query:   74 MPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGT 577
            M  IA G+  +     +L+A VAEF + ++FVFAG GS +AY+KLT + A  PAGLV+ ++AHAFALFV VS+ ANISGGH+NPAVT G  VGG+IT +    YWIAQLLGS VACLLLK+ T GL      +++G+     VV EI++TF LVYTVYATA DPK+G+
Sbjct:    1 MVRIAFGSIGDSFSVGSLKAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNGLAVPTHGVAAGLNGLQGVVMEIIITFALVYTVYATAADPKKGS 168

HSP 2 Score: 32.7278 bits (73), Expect = 3.219e-51
Identity = 17/39 (43.59%), Postives = 19/39 (48.72%), Query Frame = 1

Query:  562 PKEGNXXXXXXXXXXXXXXXNILAGGAFDGASMNPAVSF 678
            PK+G+               NILA G F G SMNPA SF
Sbjct:  164 PKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSF 202

[Close]

BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 4.196e-51
Identity = 94/168 (55.95%), Postives = 122/168 (72.62%), Query Frame = 2

Query:   74 MPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGT 577
            M  IA G+  +     +++A VAEF + ++FVFAG GS +AY+KLT + A  PAGLV+ ++AHAFALFV VS+ AN+SGGH+NPAVT G  VGG+IT +  + YWIAQ LGS VACLLLKF T GL      +++G+ A   VV EI++TF LVYTVYATA DPK+G+
Sbjct:    1 MVKIAFGSIGDSFSVASIKAYVAEFIATLLFVFAGVGSAIAYNKLTSDAALDPAGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLKFVTNGLSVPTHGVAAGMDAIQGVVMEIIITFALVYTVYATAADPKKGS 168

HSP 2 Score: 32.7278 bits (73), Expect = 4.196e-51
Identity = 17/39 (43.59%), Postives = 19/39 (48.72%), Query Frame = 1

Query:  562 PKEGNXXXXXXXXXXXXXXXNILAGGAFDGASMNPAVSF 678
            PK+G+               NILA G F G SMNPA SF
Sbjct:  164 PKKGSLGVIAPIAIGFIVGANILAAGPFSGGSMNPARSF 202

[Close]

BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP21_MAIZE (Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 2.059e-50
Identity = 95/168 (56.55%), Postives = 121/168 (72.02%), Query Frame = 2

Query:   74 MPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGT 577
            M  +A G+  +     +++A VAEF + ++FVFAG GS +AY +LT+ GA  PAGLV+ +IAHA ALFV VSV ANISGGH+NPAVTFG  VGGHIT +  + YW+AQLLG+ VACLLL F T G      A+ +G+     VVFE+V+TF LVYTVYATA DPK+G+
Sbjct:    1 MVKLAFGSVGDSFSATSIKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGVFYWVAQLLGATVACLLLGFVTHGKAIPTHAV-AGISELEGVVFEVVITFALVYTVYATAADPKKGS 167

HSP 2 Score: 32.7278 bits (73), Expect = 2.059e-50
Identity = 17/39 (43.59%), Postives = 19/39 (48.72%), Query Frame = 1

Query:  562 PKEGNXXXXXXXXXXXXXXXNILAGGAFDGASMNPAVSF 678
            PK+G+               NILA G F G SMNPA SF
Sbjct:  163 PKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSF 201

[Close]

BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 3.497e-50
Identity = 93/168 (55.36%), Postives = 121/168 (72.02%), Query Frame = 2

Query:   74 MPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGT 577
            M  I IG+  +     +L+A ++EF + ++FVFAG GS +A++KLT + A  PAGLV+ ++AHAFALFV VS+ ANISGGH+NPAVT G  VGG+IT +    YWIAQ LGS+VACLLL F T G       +++G+GA   VV EIV+TF LVYTVYATA DPK+G+
Sbjct:    1 MVKIEIGSVGDSFSVASLKAYLSEFIATLLFVFAGVGSALAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITVITGFFYWIAQCLGSIVACLLLVFVTNGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGS 168

HSP 2 Score: 32.7278 bits (73), Expect = 3.497e-50
Identity = 17/39 (43.59%), Postives = 19/39 (48.72%), Query Frame = 1

Query:  562 PKEGNXXXXXXXXXXXXXXXNILAGGAFDGASMNPAVSF 678
            PK+G+               NILA G F G SMNPA SF
Sbjct:  164 PKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSF 202

[Close]

BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 5.942e-50
Identity = 93/168 (55.36%), Postives = 119/168 (70.83%), Query Frame = 2

Query:   74 MPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRGT 577
            M  +A G+  +     +++A VAEF + ++FVFAG GS +A+ +LT+ GA  PAGLV+ ++AHA ALFV VSV AN SGGH+NPAVTFG  VGGHIT +  + YW+AQLLG+ VACLLL+F T G       +S G      VVFEIV+TF LVYTVYATA DPK+G+
Sbjct:    1 MVKLAFGSVGDSFSVTSIKAYVAEFIATLLFVFAGVGSAIAFGQLTNGGALDPAGLVAIAVAHALALFVGVSVAANTSGGHLNPAVTFGLAVGGHITVLTGLFYWVAQLLGASVACLLLRFVTHGKAIPTHGVSGGTTELEGVVFEIVITFALVYTVYATAADPKKGS 168

HSP 2 Score: 32.7278 bits (73), Expect = 5.942e-50
Identity = 17/39 (43.59%), Postives = 19/39 (48.72%), Query Frame = 1

Query:  562 PKEGNXXXXXXXXXXXXXXXNILAGGAFDGASMNPAVSF 678
            PK+G+               NILA G F G SMNPA SF
Sbjct:  164 PKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSF 202

The following BLAST results are available for this feature:

BLAST of CK740205 vs. ExPASy Swiss-Prot

BLAST of CK740205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132


Match Name	E-value	Identity	Description
TIP31_ARATH	3.859e-52	55.69	Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1...	[more]
TIP31_MAIZE	1.114e-51	56.17	Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1	[more]
TIP31_ORYSJ	1.453e-51	55.56	Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j...	[more]
TIP2_TOBAC	1.895e-51	56.97	Probable aquaporin TIP-type RB7-18C OS=Nicotiana t...	[more]
TIP23_ARATH	2.470e-51	55.95	Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3...	[more]
TIP1_TOBAC	3.219e-51	56.55	Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta...	[more]
TIP_ANTMA	4.196e-51	55.95	Probable aquaporin TIP-type OS=Antirrhinum majus G...	[more]
TIP21_MAIZE	2.059e-50	56.55	Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1	[more]
TIP22_ARATH	3.497e-50	55.36	Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ...	[more]
TIP22_MAIZE	5.942e-50	55.36	Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_6700 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66H10 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK740205 ID=CK740205; Name=CK740205; organism=Citrus sinensis; type=EST; length=679bp
AGTAATTGTAGTTTGGCTATTATAAGCTCTAGAGCTCGAAGCTAAAACTA
AAACTTGCCAAGAAAATTAAAAAATGCCCGGAATTGCTATCGGAAACCCG
GCTGAGATCGGCCAGCCCGATGCCCTTAGGGCGGCTGTCGCTGAGTTTTT
CTCCATGGTCATTTTTGTTTTTGCCGGCCAAGGGTCTGGCATGGCTTACA
GCAAGCTCACGGACAATGGAGCAACAACACCAGCAGGTCTAGTGTCAGCA
TCAATAGCTCATGCATTTGCCCTCTTCGTGGCAGTTTCTGTTGGCGCCAA
CATCTCCGGTGGACACGTGAACCCCGCTGTTACTTTCGGTGCCTTTGTTG
GCGGCCACATTACATTTGTCAGGAGTATTTTGTACTGGATTGCCCAGTTA
CTCGGATCTGTTGTTGCTTGCTTGCTTCTCAAGTTCTCCACTGGTGGATT
GGAAACATCTGCTTTTGCCCTGTCATCTGGAGTTGGTGCATGGAATGCAG
TTGTGTTTGAGATTGTGATGACCTTTGGACTGGTCTACACGGTGTATGCC
ACAGCTGTTGACCCAAAGAGGGGAACATTGGCATCATTGCACCAATTGCA
ATTGGTTTCATTGTTGGTGCCAACATCTTGGCTGGTGGTGCCTTTGATGG
TGCATCGATGAACCCTGCAGTTTCCTTTG