CK740205

Overview
NameCK740205
Unique NameCK740205
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740205_ssr414 microsatellite CK740205_ssr414:414..425. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.758e-33
Identity = 70/166 (42.17%), Postives = 95/166 (57.23%), Query Frame = 2
Query:   74 MPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKR 571
            M  + +G+  E  +PD  R  + E     +FVF G G+ M     T  G+T    L + ++  A  + V  + G +ISGGHVNPAVT    VGGH+T  RS LY  AQ+L S  AC LL++ TGGL T   AL+ GVG    VV E V TF L++ +YAT +DP++
Sbjct:    1 MGKLTLGHRGEASEPDFFRGVLGELVLTFLFVFIGVGAAMT-DGATTKGSTAGGDLTAVALGQALVVAVIATAGFHISGGHVNPAVTLSLAVGGHVTLFRSSLYIAAQMLASSAACFLLRWLTGGLATPVHALAEGVGPLQGVVAEAVFTFSLLFVIYATILDPRK 165          

HSP 2 Score: 28.4906 bits (62), Expect = 2.758e-33
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  622 NILAGGAFDGASMNPAVSF 678
            N +AG A  GASMNPA SF
Sbjct:  182 NSVAGAALSGASMNPARSF 200          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.042e-32
Identity = 69/156 (44.23%), Postives = 92/156 (58.97%), Query Frame = 2
Query:  104 EIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTP-AGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPK 568
            E+     +RA +AE     +FVF G  + MA       GA  P A L   +IA A A  V V+ G ++SGGH+NPAVT      GHIT  RS LY  AQLL S +AC+LL++ TGG+ T    L SG+G    +V EI++TF L++ VYAT +DP+
Sbjct:   12 EVVDAGCVRAVLAELVLTFVFVFTGVAATMAAGVPEVAGAAMPMAALAGVAIATALAAGVLVTAGFHVSGGHLNPAVTVALLARGHITAFRSALYVAAQLLASSLACILLRYLTGGMATPVHTLGSGIGPMQGLVMEIILTFSLLFVVYATILDPR 167          

HSP 2 Score: 31.5722 bits (70), Expect = 5.042e-32
Identity = 14/19 (73.68%), Postives = 15/19 (78.95%), Query Frame = 1
Query:  622 NILAGGAFDGASMNPAVSF 678
            N +AGG F GASMNPA SF
Sbjct:  185 NTIAGGNFSGASMNPARSF 203          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.113e-31
Identity = 67/156 (42.95%), Postives = 93/156 (59.62%), Query Frame = 2
Query:  104 EIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTP-AGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPK 568
            EI     +RA +AE     +FVF G  + MA       G   P A L + +IAHA A  V V+ G ++SGGH+NPAVT G  V GHIT +R++LY  AQLL S  AC+LL+F +GG+ T   AL  G+     +V E+++TF L++  YA  +DP+
Sbjct:   16 EIPDVGCVRAVLAELVLTFLFVFTGVSAAMAAGSDGKPGDAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGLMVRGHITKLRAVLYVAAQLLASSAACVLLRFLSGGMVTPVHALGRGISPMQGLVMEVILTFSLLFVTYAMILDPR 171          

HSP 2 Score: 31.5722 bits (70), Expect = 1.113e-31
Identity = 15/19 (78.95%), Postives = 15/19 (78.95%), Query Frame = 1
Query:  622 NILAGGAFDGASMNPAVSF 678
            N LAGG F GASMNPA SF
Sbjct:  189 NSLAGGNFTGASMNPARSF 207          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.449e-31
Identity = 71/166 (42.77%), Postives = 93/166 (56.02%), Query Frame = 2
Query:   74 MPGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKR 571
            M  + +G+  E  +P  LRA   E     +FVF G  S +   K    GA   A + +A++A A  + V  + G ++SGGH+NPAVT    VGGHIT  RS LY  AQL GS +ACLLL+  TGG  T   AL+ GVG    V  E V TF L+  + AT +DP+R
Sbjct:    6 MTKLELGHRGEAWEPGCLRAVAGELLFTFLFVFIGVASTITAGKAA-GGAGEAAAVTAAAMAQALVVAVLATAGFHVSGGHLNPAVTLSLAVGGHITLFRSALYVAAQLAGSSLACLLLRCLTGGAATPVHALADGVGPVQGVAAEAVFTFTLLLVICATILDPRR 170          

HSP 2 Score: 30.8018 bits (68), Expect = 1.449e-31
Identity = 14/19 (73.68%), Postives = 15/19 (78.95%), Query Frame = 1
Query:  622 NILAGGAFDGASMNPAVSF 678
            N +AGGA  GASMNPA SF
Sbjct:  188 NTVAGGALTGASMNPARSF 206          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 4.165e-31
Identity = 67/153 (43.79%), Postives = 96/153 (62.75%), Query Frame = 2
Query:  116 PDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRG 574
            P ALRA  AEFFS  +FVF   GS ++   LT +  +  + L++ ++A AF LF AV + A++SGGHVNPAVTF   +GGHIT   +I YW +Q+LGS  ACL+L + + G       ++  +  + A + E V+TF +VYTV+  A DP+ G
Sbjct:   14 PPALRAYFAEFFSTFLFVFIAVGSTISARMLTPDETSDASSLMATAVAQAFGLFAAVFIAADVSGGHVNPAVTFAYAIGGHITVPSAIFYWASQMLGSTFACLVLHYISAGQAVPTTRIAVEMTGFGAGILEGVLTFMVVYTVH-VAGDPRGG 165          

HSP 2 Score: 27.7202 bits (60), Expect = 4.165e-31
Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  625 ILAGGAFDGASMNPAVSF 678
            +LA G+  GASMNPA SF
Sbjct:  191 VLAAGSLTGASMNPARSF 208          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.168e-31
Identity = 67/158 (42.41%), Postives = 96/158 (60.76%), Query Frame = 2
Query:  104 EIGQPDA--LRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTP-AGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPK 568
            E   PD   +RA +AE     +FVF G  + MA       G   P A L + +IAHA A  V V+ G ++SGGH+NPAVT G  V GHIT +R++LY  AQLL S +AC+LL++ +GG+ T   AL +G+     +V E+++TF L++  YA  +DP+
Sbjct:   16 EAPAPDVGCVRAVLAELVLTFLFVFTGVSASMAAGAGGKPGEAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGILVRGHITKLRALLYVAAQLLASSLACILLRYLSGGMVTPVHALGAGIRPMQGLVMEVILTFSLLFVTYAMILDPR 173          

HSP 2 Score: 31.5722 bits (70), Expect = 4.168e-31
Identity = 15/19 (78.95%), Postives = 15/19 (78.95%), Query Frame = 1
Query:  622 NILAGGAFDGASMNPAVSF 678
            N LAGG F GASMNPA SF
Sbjct:  191 NSLAGGNFTGASMNPARSF 209          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP51_ARATH (Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.187e-28
Identity = 64/152 (42.11%), Postives = 92/152 (60.53%), Query Frame = 2
Query:  119 DALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRG 574
            +ALR  V+EF S   FV A  GS M+  KL     + P G++  +IA+A AL  +V +  N+SGGHVNPAVTF   V G I+   ++ YW +Q++ SV+ACL+LK +        + ++  +  + A V E V+ F LVYTV+ TA DP+RG
Sbjct:   20 NALRCYVSEFISTFFFVLAAVGSVMSSRKLMAGDVSGPFGVLIPAIANALALSSSVYISWNVSGGHVNPAVTFAMAVAGRISVPTAMFYWTSQMIASVMACLVLKVTVMEQHVPIYKIAGEMTGFGASVLEGVLAFVLVYTVF-TASDPRRG 170          

HSP 2 Score: 30.0314 bits (66), Expect = 5.187e-28
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  622 NILAGGAFDGASMNPAVSF 678
            N+LA G F G SMNPA +F
Sbjct:  187 NVLAAGPFSGGSMNPACAF 205          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: TIP51_MAIZE (Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.789e-28
Identity = 62/143 (43.36%), Postives = 87/143 (60.84%), Query Frame = 2
Query:  122 ALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAG-LVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVY 547
            +LR+ +AEF S  +FVF   GS ++   LT    T+ AG LV+ ++A AF LF AV + A++SGGHVNPAVTF   +GG I    ++ YW +QLLG+  ACL L   + G E     ++  +  +   V E V+TF LVYTV+
Sbjct:   18 SLRSYLAEFISTFLFVFTAVGSAISARMLTTPDVTSSAGPLVATAVAQAFGLFAAVLIAADVSGGHVNPAVTFAYAIGGRIGVPSAMFYWASQLLGATFACLSLNLFSAGEEVPTTRIAVAMTGFGGAVLEGVLTFLLVYTVH 160          

HSP 2 Score: 28.8758 bits (63), Expect = 8.789e-28
Identity = 13/18 (72.22%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  625 ILAGGAFDGASMNPAVSF 678
            +LA GA  GASMNPA SF
Sbjct:  196 VLAAGALTGASMNPARSF 213          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.467e-20
Identity = 70/179 (39.11%), Postives = 98/179 (54.75%), Query Frame = 2
Query:   77 PGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTD---NGATTPAGLVSA-SIAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK-FST-------GGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKR 571
            P   + + AE+G     RA +AEF + ++F++    + + Y   TD   +GA    G V    IA AF   +F+ V   A ISGGH+NPAVTFG F+   ++ VR+ILY +AQ LG++    L+K F +       GG  T A   S G G    +  EI+ TF LVYTV+ +A DPKR
Sbjct:   25 PPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYIVAQCLGAICGVGLVKAFQSAYFNRYGGGANTLAAGYSKGTG----LAAEIIGTFVLVYTVF-SATDPKR 198          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.208e-20
Identity = 62/166 (37.35%), Postives = 92/166 (55.42%), Query Frame = 2
Query:  104 EIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTP----AGLVSASIAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKR 571
            E+G+    RA +AEF + ++F++    + + Y   TD  A+ P    +G+    IA AF   +F+ V   A ISGGH+NPAVTFG F+   ++ VR++LY  AQ LG++    L+K    G        A  +S+G      +  EI+ TF LVYTV+ +A DPKR
Sbjct:   33 ELGKWSLYRAVIAEFVATLLFLYITVATVIGYKHQTDASASGPDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMAAQSLGAICGVALVKGFQSGFYARYGGGANEVSAGYSTGTGLAAEIIGTFVLVYTVF-SATDPKR 197          
The following BLAST results are available for this feature:
BLAST of CK740205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
TIP43_MAIZE2.758e-3342.17Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
TIP41_ORYSJ5.042e-3244.23Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]
TIP41_MAIZE1.113e-3142.95Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]
TIP42_ORYSJ1.449e-3142.77Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]
TIP51_ORYSJ4.165e-3143.79Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]
TIP42_MAIZE4.168e-3142.41Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
TIP51_ARATH5.187e-2842.11Probable aquaporin TIP5-1 OS=Arabidopsis thaliana ... [more]
TIP51_MAIZE8.789e-2843.36Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1[more]
PIP21_ORYSJ2.467e-2039.11Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP26_MAIZE4.208e-2037.35Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6700 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740205 ID=CK740205; Name=CK740205; organism=Citrus sinensis; type=EST; length=679bp
AGTAATTGTAGTTTGGCTATTATAAGCTCTAGAGCTCGAAGCTAAAACTA
AAACTTGCCAAGAAAATTAAAAAATGCCCGGAATTGCTATCGGAAACCCG
GCTGAGATCGGCCAGCCCGATGCCCTTAGGGCGGCTGTCGCTGAGTTTTT
CTCCATGGTCATTTTTGTTTTTGCCGGCCAAGGGTCTGGCATGGCTTACA
GCAAGCTCACGGACAATGGAGCAACAACACCAGCAGGTCTAGTGTCAGCA
TCAATAGCTCATGCATTTGCCCTCTTCGTGGCAGTTTCTGTTGGCGCCAA
CATCTCCGGTGGACACGTGAACCCCGCTGTTACTTTCGGTGCCTTTGTTG
GCGGCCACATTACATTTGTCAGGAGTATTTTGTACTGGATTGCCCAGTTA
CTCGGATCTGTTGTTGCTTGCTTGCTTCTCAAGTTCTCCACTGGTGGATT
GGAAACATCTGCTTTTGCCCTGTCATCTGGAGTTGGTGCATGGAATGCAG
TTGTGTTTGAGATTGTGATGACCTTTGGACTGGTCTACACGGTGTATGCC
ACAGCTGTTGACCCAAAGAGGGGAACATTGGCATCATTGCACCAATTGCA
ATTGGTTTCATTGTTGGTGCCAACATCTTGGCTGGTGGTGCCTTTGATGG
TGCATCGATGAACCCTGCAGTTTCCTTTG
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