CK740205

Overview
NameCK740205
Unique NameCK740205
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740205_ssr414 microsatellite CK740205_ssr414:414..425. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.143e-18
Identity = 57/162 (35.19%), Postives = 90/162 (55.56%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTD------NGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA--------LSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKR 571
            RA +AEF + ++F++    + + Y   +D      + A +  G++  + A    +F+ V   A ISGGH+NPAVTFG F+   ++ +R++LY IAQ LG++    L+K    G ++S +A        LS G      +  EI+ TF LVYTV+ +A DPKR
Sbjct:   41 RAVIAEFIATLLFLYITVATVIGYKHQSDATVNTTDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYIIAQCLGAICGVGLVK----GFQSSYYARYGGGANELSDGYSKGTGLGAEIIGTFVLVYTVF-SATDPKR 197          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.718e-18
Identity = 62/159 (38.99%), Postives = 86/159 (54.09%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTD----NGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKF--ST-----GGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKR 571
            RA +AEF + ++F++    + + +   TD     GA    GL+  S A    +F+ V   A ISGGH+NPAVTFG F+   ++ VR++ Y +AQ LG+     L+K   ST     GG    A  LS G      V  EI+ TF LVYTV+ +A DPKR
Sbjct:   38 RAVIAEFIATLLFLYVTVLTVIGFKSQTDINAGGGACASVGLLGISWAFGGMIFILVYCTAGISGGHINPAVTFGLFLASKVSLVRAVSYMVAQCLGATCGVGLVKVFQSTYYNRYGG---GANMLSDGYNVGVGVGAEIIGTFVLVYTVF-SATDPKR 192          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.718e-18
Identity = 58/158 (36.71%), Postives = 86/158 (54.43%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTP----AGLVSASIAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKR 571
            RA +AEF + ++F++    + + Y   +D GA       +G+    IA AF   +F+ V   A +SGGH+NPAVTFG F+   ++ VR++LY +AQ LG++    L+K             A  LS G      +  EI+ TF LVYTV+ +A DPKR
Sbjct:   42 RAVIAEFVATLLFLYITVATVIGYKHQSDPGANAADAACSGVGILGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRAVLYIVAQSLGAICGVGLVKGFQSAFYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVF-SATDPKR 198          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.497e-17
Identity = 59/156 (37.82%), Postives = 84/156 (53.85%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDN--GATTPAGLVSASIAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKR 571
            RA +AEF + ++F++    + + Y   TD   G     G+    IA AF   +FV V   A ISGGH+NPAVT G F+   ++ VR++LY +AQ LG++  C  +K       T     A  L+ G      +  EI+ TF LVYTV+ +A DPKR
Sbjct:   39 RAVIAEFVATLLFLYVSILTVIGYKAQTDATAGGVDCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTVGLFLARKVSLVRTVLYIVAQCLGAICGCGFVKAFQSSYYTRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKR 193          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.497e-17
Identity = 52/148 (35.14%), Postives = 82/148 (55.41%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAG----LVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAF---ALSSGVGAWNAVVFEIVMTFGLVYTVYA 550
            RA +AEF +M++FVF   G+ + ++   +  A    G    +V  S+A   ++        ++SG H+NPAVT G  +   I+ +++++Y IAQ LG+VVA  +L   T GLE ++     LS GV A   +  EI++TF LV  V A
Sbjct:   12 RAVIAEFLAMILFVFISIGAALGFNFPIEEKANQTVGRSQDIVKVSLAFGISIATMAQSVGHVSGAHLNPAVTLGCLLSCQISILKAVMYIIAQCLGAVVATAILSGITSGLENNSLGLNGLSPGVSAGQGLGVEILVTFQLVLCVVA 159          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.955e-17
Identity = 56/152 (36.84%), Postives = 87/152 (57.24%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGG----LETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKR 571
            RAA+AEF + ++F++    + + Y K TD  A+   GL+  + +    +FV V   A ISGGH+NPAVTFG F+   ++ +R+++Y IAQ  G++    L+K    G        A +++ G     A   E++ TF LVYTV+ +A DPKR
Sbjct:   40 RAAIAEFIATLLFLYITVATVIGYKKETDPCASV--GLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCAGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTAFGAELIGTFVLVYTVF-SATDPKR 188          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.354e-17
Identity = 60/156 (38.46%), Postives = 87/156 (55.77%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK------FST--GGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKR 571
            RA +AEF + ++F++    + + + K T  G     GL+  + A    +FV V   A ISGGH+NPAVTFG F+   ++ VR++ Y IAQ LG++     +K      ++T  GG  T A   S G     A+  EI+ TF LVYTV+ +A DPKR
Sbjct:   38 RALIAEFIATLLFLYVTVATVIGHKKQT--GPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALGYMIAQCLGAICGVGFVKAFMKTPYNTLGGGANTVADGYSKG----TALGAEIIGTFVLVYTVF-SATDPKR 186          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.354e-17
Identity = 60/165 (36.36%), Postives = 88/165 (53.33%), Query Frame = 2
Query:  101 AEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYS--KLTDNGATTPAGLVSASIAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLET----SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKR 571
            AE+ +    RA +AEF + ++F++    + + Y     TD G     G+    IA AF   +F+ V   A ISGGH+NPAVTFG F+   ++  R++LY IAQ LG++     +K       T     A +L+ G      +  EI+ TF LVYTV+ +A DPKR
Sbjct:   30 AELKKWSFYRAVIAEFVATLLFLYITVLTVIGYKIQSDTDAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLPRALLYIIAQCLGAICGVGFVKAFQSSYYTRYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVF-SATDPKR 193          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 4.354e-17
Identity = 56/148 (37.84%), Postives = 85/148 (57.43%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAV---SVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAF---ALSSGVGAWNAVVFEIVMTFGLVYTVYAT 553
            RA VAEF +M++F+F   GS + +     +  TT A   +  ++ AF L +A    SVG +ISG H+NPAVT G  +   I+ +R+I+Y IAQ +G++VA ++L   T  L  ++    AL+ GV +   +  EI+ T  LV  V AT
Sbjct:   12 RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVG-HISGAHLNPAVTLGLLLSCQISILRAIMYIIAQCVGAIVATVILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLAT 158          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: AQP1_CANFA (Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 55/148 (37.16%), Postives = 83/148 (56.08%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAV---SVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA---LSSGVGAWNAVVFEIVMTFGLVYTVYAT 553
            RA VAEF +M++FVF   GS + ++    N  T  A   +  ++ AF L +A    SVG +ISG H+NPAVT G  +   I+ +R+++Y IAQ +G++VA  +L   T  L  ++     L+ GV +   +  EI+ T  LV  V AT
Sbjct:   12 RAVVAEFLAMILFVFISIGSALGFNYPVRNNQTAGAAQDNVKVSLAFGLSIATLAQSVG-HISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLPDNSLGRNELAPGVNSGQGLGIEIIGTLQLVLCVLAT 158          
The following BLAST results are available for this feature:
BLAST of CK740205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
PIP22_ORYSJ5.143e-1835.19Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP26_ARATH6.718e-1838.99Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP23_ORYSJ6.718e-1836.71Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
PIP24_ARATH1.497e-1737.82Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
AQPA_RANES1.497e-1735.14Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]
PIP1_ATRCA1.955e-1736.84Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP27_ARATH4.354e-1738.46Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP21_ARATH4.354e-1736.36Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
AQP1_SHEEP4.354e-1737.84Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3[more]
AQP1_CANFA5.687e-1737.16Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6700 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740205 ID=CK740205; Name=CK740205; organism=Citrus sinensis; type=EST; length=679bp
AGTAATTGTAGTTTGGCTATTATAAGCTCTAGAGCTCGAAGCTAAAACTA
AAACTTGCCAAGAAAATTAAAAAATGCCCGGAATTGCTATCGGAAACCCG
GCTGAGATCGGCCAGCCCGATGCCCTTAGGGCGGCTGTCGCTGAGTTTTT
CTCCATGGTCATTTTTGTTTTTGCCGGCCAAGGGTCTGGCATGGCTTACA
GCAAGCTCACGGACAATGGAGCAACAACACCAGCAGGTCTAGTGTCAGCA
TCAATAGCTCATGCATTTGCCCTCTTCGTGGCAGTTTCTGTTGGCGCCAA
CATCTCCGGTGGACACGTGAACCCCGCTGTTACTTTCGGTGCCTTTGTTG
GCGGCCACATTACATTTGTCAGGAGTATTTTGTACTGGATTGCCCAGTTA
CTCGGATCTGTTGTTGCTTGCTTGCTTCTCAAGTTCTCCACTGGTGGATT
GGAAACATCTGCTTTTGCCCTGTCATCTGGAGTTGGTGCATGGAATGCAG
TTGTGTTTGAGATTGTGATGACCTTTGGACTGGTCTACACGGTGTATGCC
ACAGCTGTTGACCCAAAGAGGGGAACATTGGCATCATTGCACCAATTGCA
ATTGGTTTCATTGTTGGTGCCAACATCTTGGCTGGTGGTGCCTTTGATGG
TGCATCGATGAACCCTGCAGTTTCCTTTG
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