CK740205

Overview
NameCK740205
Unique NameCK740205
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17
Identity = 56/156 (35.90%), Postives = 87/156 (55.77%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDN--GATTPAGLVSASIAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK-FSTGGLET---SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKR 571
            RA +AEF + ++F++    + + Y   +D   G     G+    IA AF   +F+ V   A ISGGH+NPAVTFG F+   ++ +R++LY +AQ LG++     +K F +   +     A +L+ G      +  EI+ TF LVYTV+ +A DPKR
Sbjct:   37 RAVIAEFVATLLFLYITVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSYYDRYGGGANSLADGYNTGTGLAAEIIGTFVLVYTVF-SATDPKR 191          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: AQP1_PIG (Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17
Identity = 55/148 (37.16%), Postives = 83/148 (56.08%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAV---SVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVGAWNAVVFEIVMTFGLVYTVYAT 553
            RA VAEF +M +F+F   GS + +     N  T+ A   +  ++ AF L +A    SVG +ISG H+NPAVT G  +   I+ +R+++Y IAQ +G++VA  +L   T  L  ++  L+S   GV +   +  EI+ T  LV  V AT
Sbjct:   12 RAVVAEFLAMTLFIFISIGSALGFQYPVRNNQTSGAAQDNVKVSLAFGLSIATLAQSVG-HISGAHLNPAVTLGLLLSCQISVLRAVMYIIAQCVGAIVATAILSGITSSLPGNSLGLNSLAPGVDSGQGLGIEIIGTLQLVLCVLAT 158          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17
Identity = 56/148 (37.84%), Postives = 84/148 (56.76%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAV---SVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAF---ALSSGVGAWNAVVFEIVMTFGLVYTVYAT 553
            RA VAEF +M++F+F   GS + +     +  TT A   +  ++ AF L +A    SVG +ISG H+NPAVT G  +   I+ +R+I+Y IAQ +G++VA  +L   T  L  ++    AL+ GV +   +  EI+ T  LV  V AT
Sbjct:   12 RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVG-HISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLAT 158          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.655e-16
Identity = 55/156 (35.26%), Postives = 88/156 (56.41%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK------FSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKR 571
            RA +AEF + ++F++    + + Y     + A    G+ +  IA AF   +F+ V   A ISGGH+NPAVTFG  +   ++ +R+++Y +AQ LG +V   ++K      ++  G    A  ++SG     A+  EI+ TF LVYTV+ +A DPKR
Sbjct:   38 RALIAEFIATLLFLYITVATVIGYK--VQSSADQCGGVGTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGVGIVKGIMKHQYNANG--GGANMVASGYSTGTALGAEIIGTFVLVYTVF-SATDPKR 188          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.655e-16
Identity = 57/159 (35.85%), Postives = 86/159 (54.09%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDN--GATTPAGLVSASIAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK-------FSTGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKR 571
            RA +AEF + ++F++    + + Y   +D   G     G+    IA AF   +F+ V   A ISGGH+NPAVTFG F+   ++ +R++LY +AQ LG++     +K        + GG    A  L+ G      +  EI+ TF LVYTV+ +A DPKR
Sbjct:   37 RAVIAEFVATLLFLYVTVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSHYVNYGG---GANFLADGYNTGTGLAAEIIGTFVLVYTVF-SATDPKR 191          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 59/170 (34.71%), Postives = 91/170 (53.53%), Query Frame = 2
Query:   77 PGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETS-----AFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKR 571
            P   + +  E+G+    RAA+AEF + ++ V     + +   + +  G    AG++  + A    +FV V   A ISGGH+NPAVTF   +   ++  R+ LY +AQ +G+V    L +   GG + +     A  L++G  A   VV E+V TF LVYTV+ +A DPKR
Sbjct:   18 PPAPLVDTGELGKWSLYRAAIAEFTATLLLVCISVSTVIGEKRQSGEGG---AGVLGIAWAFGGLIFVLVYCTAGISGGHMNPAVTFAMVLARRVSLPRAALYTMAQCVGAVCGAGLARAMHGGGQYARHGGGANELAAGYSAGAGVVAEMVGTFVLVYTVF-SATDPKR 183          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 57/156 (36.54%), Postives = 84/156 (53.85%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFST--------GGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKR 571
            RA +AEF + ++F++    + + +   T  G     GL+  + A    +FV V   A ISGGH+NPAVTFG F+   ++  R++ Y +AQ LG++    L+K           GG  T A   S+G     A+  EI+ TF LVYTV+ +A DPKR
Sbjct:   36 RAIIAEFIATLLFLYVTVATVIGHKNQT--GPCGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVAYMVAQCLGAICGVGLVKAFMMTPYKRLGGGANTVADGYSTG----TALGAEIIGTFVLVYTVF-SATDPKR 184          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.287e-16
Identity = 52/152 (34.21%), Postives = 78/152 (51.32%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVGAWNAVVFEIVMTFGLVYTVYATAVDPKRG 574
            RA  AEFF+ + +VF G G+ + +       A  P  ++  ++A   AL   V    +ISG HVNPAVTF   VG  ++ +R+I Y +AQLLG+V    +L   T        AL++   GV    A + EI +T   V  ++AT  + + G
Sbjct:   11 RAICAEFFASLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNG 155          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.287e-16
Identity = 52/154 (33.77%), Postives = 83/154 (53.90%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRG 574
            RA +AEF + ++FVF G GS + +       A++P  ++  ++A    + + V    ++SG H+NPAVT    VG H++F+R+  Y  AQLLG+V    +L   T     G L  +  AL +   A  AV  E+ +T  LV  ++A + D +RG
Sbjct:   11 RAVLAEFLATLLFVFFGLGSALQW-------ASSPPSVLQIAVAFGLGIGILVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEITPVEIRGDLAVN--ALHNNATAGQAVTVELFLTMQLVLCIFA-STDERRG 154          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15
Identity = 52/152 (34.21%), Postives = 78/152 (51.32%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVGAWNAVVFEIVMTFGLVYTVYATAVDPKRG 574
            RA  AEFF+ + +VF G G+ + +       A  P  ++  ++A   AL   V    +ISG HVNPAVTF   VG  ++ +R+I Y +AQLLG+V    +L   T        AL++   GV    A + EI +T   V  ++AT  + + G
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNG 155          
The following BLAST results are available for this feature:
BLAST of CK740205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
PIP22_ARATH9.700e-1735.90Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
AQP1_PIG9.700e-1737.16Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3[more]
AQP1_BOVIN9.700e-1737.84Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
PIP26_ORYSJ1.655e-1635.26Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP23_ARATH1.655e-1635.85Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
PIP28_ORYSJ2.822e-1634.71Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]
PIP28_ARATH2.822e-1636.54Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
MIP_BOVIN6.287e-1634.21Lens fiber major intrinsic protein OS=Bos taurus G... [more]
AQP2_RAT6.287e-1633.77Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]
MIP_SHEEP1.072e-1534.21Lens fiber major intrinsic protein OS=Ovis aries G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6700 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740205 ID=CK740205; Name=CK740205; organism=Citrus sinensis; type=EST; length=679bp
AGTAATTGTAGTTTGGCTATTATAAGCTCTAGAGCTCGAAGCTAAAACTA
AAACTTGCCAAGAAAATTAAAAAATGCCCGGAATTGCTATCGGAAACCCG
GCTGAGATCGGCCAGCCCGATGCCCTTAGGGCGGCTGTCGCTGAGTTTTT
CTCCATGGTCATTTTTGTTTTTGCCGGCCAAGGGTCTGGCATGGCTTACA
GCAAGCTCACGGACAATGGAGCAACAACACCAGCAGGTCTAGTGTCAGCA
TCAATAGCTCATGCATTTGCCCTCTTCGTGGCAGTTTCTGTTGGCGCCAA
CATCTCCGGTGGACACGTGAACCCCGCTGTTACTTTCGGTGCCTTTGTTG
GCGGCCACATTACATTTGTCAGGAGTATTTTGTACTGGATTGCCCAGTTA
CTCGGATCTGTTGTTGCTTGCTTGCTTCTCAAGTTCTCCACTGGTGGATT
GGAAACATCTGCTTTTGCCCTGTCATCTGGAGTTGGTGCATGGAATGCAG
TTGTGTTTGAGATTGTGATGACCTTTGGACTGGTCTACACGGTGTATGCC
ACAGCTGTTGACCCAAAGAGGGGAACATTGGCATCATTGCACCAATTGCA
ATTGGTTTCATTGTTGGTGCCAACATCTTGGCTGGTGGTGCCTTTGATGG
TGCATCGATGAACCCTGCAGTTTCCTTTG
back to top