CK740205

Overview
NameCK740205
Unique NameCK740205
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740205_ssr414 microsatellite CK740205_ssr414:414..425. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15
Identity = 50/145 (34.48%), Postives = 74/145 (51.03%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA---LSSGVGAWNAVVFEIVMTFGLVYTVYAT 553
            RA VAEF +M +FVF   GS + +     N  T     V  S+A   ++        +ISG H+NPAVT G  +   I+  R+++Y IAQ +G++VA  +L   T  L  ++     L+ GV +   +  EI+ T  LV  V AT
Sbjct:   12 RAVVAEFLAMTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLPGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLAT 156          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.829e-15
Identity = 49/145 (33.79%), Postives = 76/145 (52.41%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA---LSSGVGAWNAVVFEIVMTFGLVYTVYAT 553
            RA VAEF +M +FVF   GS + ++   +   T     V  S+A   ++        +ISG H+NPAVT G  +   I+ +R+++Y IAQ +G++VA  +L   T  L  ++     L+ GV +   +  EI+ T  LV  V AT
Sbjct:   12 RAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLVDNSLGRNDLAHGVNSGQGLGIEIIGTLQLVLCVLAT 156          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 82.4185 bits (202), Expect = 2.389e-15
Identity = 49/145 (33.79%), Postives = 76/145 (52.41%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA---LSSGVGAWNAVVFEIVMTFGLVYTVYAT 553
            RA VAEF +M +FVF   GS + ++   +   T     V  S+A   ++        +ISG H+NPAVT G  +   I+ +R+++Y IAQ +G++VA  +L   T  L  ++     L+ GV +   +  EI+ T  LV  V AT
Sbjct:   12 RAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVASAILSGITSSLLENSLGRNDLARGVNSGQGLGIEIIGTLQLVLCVLAT 156          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.120e-15
Identity = 52/152 (34.21%), Postives = 76/152 (50.00%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVGAWNAVVFEIVMTFGLVYTVYATAVDPKRG 574
            RA  AEFF+ + +VF G G+ + +       A  P  ++  ++A   AL   V    +ISG HVNPAVTF   VG  ++ +R+I Y  AQLLG+V    +L   T        AL++   GV    A   EI +T   V  ++AT  + + G
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMAAQLLGAVAGAAVLYSVTPAAVRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNG 155          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: AQP2_BOVIN (Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.075e-15
Identity = 57/155 (36.77%), Postives = 83/155 (53.55%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSA-SIAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGL---ETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRG 574
            RA +AEF + ++FVF G GS + +          P  L S   IA AF L +   V A  ++SG H+NPAVT    VG H++F+R++ Y  AQLLG+V    LL   T      + +  AL++   A  AV  E+ +T  LV  ++A + D +RG
Sbjct:   11 RAVLAEFLATLLFVFFGLGSALNW----------PQALPSVLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALLHEITPPAIRGDLAVNALNNNSTAGQAVTVELFLTLQLVLCIFA-STDERRG 154          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.323e-15
Identity = 49/145 (33.79%), Postives = 73/145 (50.34%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFA---LSSGVGAWNAVVFEIVMTFGLVYTVYAT 553
            RA VAEF +  +FVF   GS + +     N  T     V  S+A   ++        +ISG H+NPAVT G  +   I+  R+++Y IAQ +G++VA  +L   T  L  ++     L+ GV +   +  EI+ T  LV  V AT
Sbjct:   12 RAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLAT 156          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 59/169 (34.91%), Postives = 86/169 (50.89%), Query Frame = 2
Query:   77 PGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK-FSTG---GLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKR 571
            P   +  P E+      RA +AEF +  +F++    + M  SK T   AT   G+   + +    +F  V   A ISGGH+NPAVTFG F+   ++  R+I Y I Q LG++    ++K F  G   G    A  ++ G    + +  EIV TF LVYTV+ +A D KR
Sbjct:   41 PPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSTSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKR 206          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 49/147 (33.33%), Postives = 78/147 (53.06%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYAT 553
            RA +AEF + ++FVF G GS + +       A++P  ++  ++A    +   V    ++SG H+NPAVT    VG H++F+R+  Y  AQLLG+V    +L   T     G L  +  AL +   A  AV  E+ +T  LV  ++A+
Sbjct:   11 RAVLAEFLATLLFVFFGLGSALQW-------ASSPPSVLQIAVAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAILHEITPVEIRGDLAVN--ALHNNATAGQAVTVELFLTMQLVLCIFAS 148          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.099e-15
Identity = 49/152 (32.24%), Postives = 74/152 (48.68%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVGAWNAVVFEIVMTFGLVYTVYATAVDPKRG 574
            RA  AEFF  + +VF G G+ + +       A  PA ++  ++A    L   V    ++SG H+NPAVTF   +G  ++  R+I Y  AQLLG+V    +L   T        AL++   GV    A   EI +T   V  ++AT  + + G
Sbjct:   11 RAVFAEFFGTMFYVFFGLGASLKW-------AAGPANVLVIALAFGLVLATMVQSIGHVSGAHINPAVTFAFLIGSQMSLFRAIFYIAAQLLGAVAGAAVLYGVTPAAIRGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNG 155          

HSP 2 Score: 22.7126 bits (47), Expect = 7.099e-15
Identity = 11/17 (64.71%), Postives = 12/17 (70.59%), Query Frame = 1
Query:  628 LAGGAFDGASMNPAVSF 678
            L G  + GASMNPA SF
Sbjct:  173 LFGLYYTGASMNPARSF 189          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 9.079e-15
Identity = 56/169 (33.14%), Postives = 87/169 (51.48%), Query Frame = 2
Query:   77 PGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK-FSTGGLETS---AFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKR 571
            P   +  P E+      RA +AEF +  +F++    + M  +  T   AT   G+   + +    +F  V   A ISGGH+NPAVTFG F+   ++  R++ Y + Q LG++    ++K F  G  ET+   A  ++ G    + +  EIV TF LVYTV+ +A D KR
Sbjct:   37 PPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVNNSTSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQKGLYETTGGGANVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKR 202          
The following BLAST results are available for this feature:
BLAST of CK740205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
AQP1_PONAB1.072e-1534.48Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3[more]
AQP1_MOUSE1.829e-1533.79Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3[more]
AQP1_RAT2.389e-1533.79Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4[more]
MIP_RABIT3.120e-1534.21Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
AQP2_BOVIN4.075e-1536.77Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2[more]
AQP1_HUMAN5.323e-1533.79Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]
PIP13_MAIZE6.952e-1534.91Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
AQP2_MOUSE6.952e-1533.33Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
MIP_RANPI7.099e-1532.24Lens fiber major intrinsic protein OS=Rana pipiens... [more]
PIP12_ORYSJ9.079e-1533.14Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6700 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740205 ID=CK740205; Name=CK740205; organism=Citrus sinensis; type=EST; length=679bp
AGTAATTGTAGTTTGGCTATTATAAGCTCTAGAGCTCGAAGCTAAAACTA
AAACTTGCCAAGAAAATTAAAAAATGCCCGGAATTGCTATCGGAAACCCG
GCTGAGATCGGCCAGCCCGATGCCCTTAGGGCGGCTGTCGCTGAGTTTTT
CTCCATGGTCATTTTTGTTTTTGCCGGCCAAGGGTCTGGCATGGCTTACA
GCAAGCTCACGGACAATGGAGCAACAACACCAGCAGGTCTAGTGTCAGCA
TCAATAGCTCATGCATTTGCCCTCTTCGTGGCAGTTTCTGTTGGCGCCAA
CATCTCCGGTGGACACGTGAACCCCGCTGTTACTTTCGGTGCCTTTGTTG
GCGGCCACATTACATTTGTCAGGAGTATTTTGTACTGGATTGCCCAGTTA
CTCGGATCTGTTGTTGCTTGCTTGCTTCTCAAGTTCTCCACTGGTGGATT
GGAAACATCTGCTTTTGCCCTGTCATCTGGAGTTGGTGCATGGAATGCAG
TTGTGTTTGAGATTGTGATGACCTTTGGACTGGTCTACACGGTGTATGCC
ACAGCTGTTGACCCAAAGAGGGGAACATTGGCATCATTGCACCAATTGCA
ATTGGTTTCATTGTTGGTGCCAACATCTTGGCTGGTGGTGCCTTTGATGG
TGCATCGATGAACCCTGCAGTTTCCTTTG
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