CK740205

Overview
NameCK740205
Unique NameCK740205
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740205_ssr414 microsatellite CK740205_ssr414:414..425. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.079e-15
Identity = 58/169 (34.32%), Postives = 87/169 (51.48%), Query Frame = 2
Query:   77 PGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK-FSTG---GLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKR 571
            P   +  P E+      RA +AEF +  +F++    + M  SK +   AT   G+   + +    +F  V   A ISGGH+NPAVTFG F+   ++  R+I Y + Q LG++    ++K F  G   G    A  ++SG    + +  EIV TF LVYTV+ +A D KR
Sbjct:   38 PPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGVSKSSSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQQGLYMGNGGGANVVASGYTKGDGLGAEIVGTFILVYTVF-SATDAKR 203          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.079e-15
Identity = 52/152 (34.21%), Postives = 75/152 (49.34%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALS---SGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRG 574
            RA  AEFF+ + +VF G GS + +       A  P  ++  ++A   AL   V    +ISG HVNPAVTF   VG  ++ +R+  Y  AQLLG+V    +L   T        AL+   +GV    A   EI +T   V  ++AT  + + G
Sbjct:    9 RAIFAEFFATLFYVFFGLGSSLRW-------APGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNG 153          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.186e-14
Identity = 59/169 (34.91%), Postives = 86/169 (50.89%), Query Frame = 2
Query:   77 PGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK-FSTG---GLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKR 571
            P   +  P E+      RA +AEF +  +F++    + M  SK T   AT   G+   + +    +F  V   A ISGGH+NPAVTFG F+   ++  R++ Y I Q LG+V    ++K F  G   G    A  ++ G    + +  EIV TF LVYTV+ +A D KR
Sbjct:   38 PPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGVSKSTSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAVCGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKR 203          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.549e-14
Identity = 51/152 (33.55%), Postives = 75/152 (49.34%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALS---SGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRG 574
            RA  AEFF+ + +VF G G+ + +       A  P  ++  ++A   AL   V    +ISG HVNPAVTF   VG  ++ +R+  Y  AQLLG+V    +L   T        AL+   +GV    A   EI +T   V  ++AT  + + G
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNG 155          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.549e-14
Identity = 55/154 (35.71%), Postives = 77/154 (50.00%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSS---GVGAWNAVVFEIVMTFGLVYTVYATAVDPKRG 574
            RA  AEFF+ + +VF G G+ + +         TP  L    +A AF L +A  V A  +ISG HVNPAVTF   VG  ++ +R+  Y  AQLLG+V    +L   T        AL++   GV    A   EI +T   V  ++AT  + + G
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW---------TPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATTVEIFLTLQFVLCIFATYDERRNG 155          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: AQP2_SHEEP (Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.549e-14
Identity = 56/155 (36.13%), Postives = 82/155 (52.90%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSA-SIAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGL---ETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRG 574
            RA +AEF + ++FVF G GS + +          P  L S   IA AF L +   V A  ++SG H+NPAVT    VG H++F+R++ Y  AQLLG+V    LL   T      + +  AL++   A  AV  E+ +T  LV  ++  + D +RG
Sbjct:   11 RAVLAEFLATLLFVFFGLGSALNW----------PQALPSVLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALLHEITPPAIRGDLAVNALNNNSTAGQAVTVELFLTLQLVLCIF-PSTDKRRG 154          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 54/152 (35.53%), Postives = 82/152 (53.95%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK-FSTG---GLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKR 571
            RA +AEF +  +F++    + M  SK +   AT   G+   + +    +F  V   A ISGGH+NPAVTFG F+   ++  R++ Y + Q LG++    ++K F  G   G    A A++ G    + +  EIV TF LVYTV+ +A D KR
Sbjct:   54 RAGIAEFVATFLFLYISILTVMGVSKSSSKCATV--GIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQEGLYMGAGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVF-SATDAKR 202          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 51/152 (33.55%), Postives = 75/152 (49.34%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALS---SGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRG 574
            RA  AEFF+ + +VF G G+ + +       A  P  ++  ++A   AL   V    +ISG HVNPAVTF   VG  ++ +R+  Y  AQLLG+V    +L   T        AL+   +GV    A   EI +T   V  ++AT  + + G
Sbjct:   11 RAIFAEFFATLFYVFFGLGASLRW-------APGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNG 155          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 58/175 (33.14%), Postives = 88/175 (50.29%), Query Frame = 2
Query:   77 PGIAIGNPAEIGQPDALRAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLK------FST--GGLETSA--FALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKR 571
            P   +  P E+      RA +AEF +  +F++    + M   +  +  A+   G+   + A    +F  V   A ISGGH+NPAVTFG F+   ++  R++ Y I Q LG++    ++K      + T  GG  T A  +   SG+GA      EI+ TF LVYTV+ +A D KR
Sbjct:   36 PPAPLFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKRAPNMCASV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQPTPYQTLGGGANTVAHGYTKGSGLGA------EIIGTFVLVYTVF-SATDAKR 201          
BLAST of CK740205 vs. ExPASy Swiss-Prot
Match: AQP2_HUMAN (Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 60/157 (38.22%), Postives = 81/157 (51.59%), Query Frame = 2
Query:  128 RAAVAEFFSMVIFVFAGQGSGMAYSKLTDNGATTPAGLVSA-SIAHAFALFVAVSVGA--NISGGHVNPAVTFGAFVGGHITFVRSILYWIAQLLGSVVACLLLKFST-----GGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKRG 574
            RA  AEF + ++FVF G GS + +          P  L S   IA AF L +   V A  +ISG H+NPAVT    VG H++ +R+  Y  AQLLG+V    LL   T     G L  +  ALS+   A  AV  E+ +T  LV  ++A + D +RG
Sbjct:   11 RAVFAEFLATLLFVFFGLGSALNW----------PQALPSVLQIAMAFGLGIGTLVQALGHISGAHINPAVTVACLVGCHVSVLRAAFYVAAQLLGAVAGAALLHEITPADIRGDLAVN--ALSNSTTAGQAVTVELFLTLQLVLCIFA-STDERRG 154          
The following BLAST results are available for this feature:
BLAST of CK740205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
PIP11_ORYSJ9.079e-1534.32Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
MIP_RAT9.079e-1534.21Lens fiber major intrinsic protein (Fragment) OS=R... [more]
PIP12_MAIZE1.186e-1434.91Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
MIP_CAVPO1.549e-1433.55Lens fiber major intrinsic protein OS=Cavia porcel... [more]
MIP_CANFA1.549e-1435.71Lens fiber major intrinsic protein OS=Canis famili... [more]
AQP2_SHEEP1.549e-1436.13Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1[more]
PIP15_MAIZE2.023e-1435.53Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
MIP_MOUSE2.023e-1433.55Lens fiber major intrinsic protein OS=Mus musculus... [more]
PIP14_ARATH2.642e-1433.14Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
AQP2_HUMAN3.450e-1438.22Aquaporin-2 OS=Homo sapiens GN=AQP2 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6700 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740205 ID=CK740205; Name=CK740205; organism=Citrus sinensis; type=EST; length=679bp
AGTAATTGTAGTTTGGCTATTATAAGCTCTAGAGCTCGAAGCTAAAACTA
AAACTTGCCAAGAAAATTAAAAAATGCCCGGAATTGCTATCGGAAACCCG
GCTGAGATCGGCCAGCCCGATGCCCTTAGGGCGGCTGTCGCTGAGTTTTT
CTCCATGGTCATTTTTGTTTTTGCCGGCCAAGGGTCTGGCATGGCTTACA
GCAAGCTCACGGACAATGGAGCAACAACACCAGCAGGTCTAGTGTCAGCA
TCAATAGCTCATGCATTTGCCCTCTTCGTGGCAGTTTCTGTTGGCGCCAA
CATCTCCGGTGGACACGTGAACCCCGCTGTTACTTTCGGTGCCTTTGTTG
GCGGCCACATTACATTTGTCAGGAGTATTTTGTACTGGATTGCCCAGTTA
CTCGGATCTGTTGTTGCTTGCTTGCTTCTCAAGTTCTCCACTGGTGGATT
GGAAACATCTGCTTTTGCCCTGTCATCTGGAGTTGGTGCATGGAATGCAG
TTGTGTTTGAGATTGTGATGACCTTTGGACTGGTCTACACGGTGTATGCC
ACAGCTGTTGACCCAAAGAGGGGAACATTGGCATCATTGCACCAATTGCA
ATTGGTTTCATTGTTGGTGCCAACATCTTGGCTGGTGGTGCCTTTGATGG
TGCATCGATGAACCCTGCAGTTTCCTTTG
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