CK740206

Overview
NameCK740206
Unique NameCK740206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length199
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P1_SHIFL (Glyceraldehyde-3-phosphate dehydrogenase A OS=Shigella flexneri GN=gapA PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.995e-12
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            F G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H++K
Sbjct:  284 FNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P1_SALTY (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhimurium GN=gapA PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.995e-12
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            F G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H++K
Sbjct:  284 FNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P1_SALTI (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhi GN=gapA PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.995e-12
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            F G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H++K
Sbjct:  284 FNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P1_ESCF3 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gapA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.995e-12
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            F G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H++K
Sbjct:  284 FNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P1_ECOLI (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli (strain K12) GN=gapA PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.995e-12
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            F G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H++K
Sbjct:  284 FNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P1_ECOL6 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O6 GN=gapA PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.995e-12
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            F G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H++K
Sbjct:  284 FNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P1_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O157:H7 GN=gapA PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.995e-12
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            F G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H++K
Sbjct:  284 FNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P1_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap1 PE=3 SV=4)

HSP 1 Score: 70.0922 bits (170), Expect = 3.995e-12
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 151
            F GD+ SSIFDA AGI L+  F K+V+WYDNEWGYS RVVDL++ M + +
Sbjct:  289 FQGDTHSSIFDAGAGIELNSNFFKVVAWYDNEWGYSNRVVDLMLSMIQKE 338          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P_RABIT (Glyceraldehyde-3-phosphate dehydrogenase OS=Oryctolagus cuniculus GN=GAPDH PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 5.218e-12
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 151
            F   + SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+VHMA  +
Sbjct:  284 FNSATHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P_LYOSH (Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophyllum shimeji GN=GPD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.814e-12
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            F+G   SSIFDA+AGI L+  FVKL+ WYDNEWGYS RV DL+V  A+
Sbjct:  284 FIGHHASSIFDAQAGIQLNPNFVKLIVWYDNEWGYSARVCDLLVFAAE 331          
The following BLAST results are available for this feature:
BLAST of CK740206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
G3P1_SHIFL3.995e-1266.67Glyceraldehyde-3-phosphate dehydrogenase A OS=Shig... [more]
G3P1_SALTY3.995e-1266.67Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_SALTI3.995e-1266.67Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_ESCF33.995e-1266.67Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOLI3.995e-1266.67Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOL63.995e-1266.67Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECO573.995e-1266.67Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ANAVT3.995e-1262.00Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P_RABIT5.218e-1266.00Glyceraldehyde-3-phosphate dehydrogenase OS=Orycto... [more]
G3P_LYOSH6.814e-1264.58Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophy... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6701 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740206 ID=CK740206; Name=CK740206; organism=Citrus sinensis; type=EST; length=199bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATGACAATGAGTGG
GGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACATGGCGAAGACCCA
GTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTTAGTTGTGCTAA
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