CK740206

Overview
NameCK740206
Unique NameCK740206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length199
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:322..520. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.418e-17
Identity = 42/50 (84.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 151
            F GDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYSTRVVDLI HM  T+
Sbjct:  288 FQGDSRSSIFDAKAGIALNGNFVKLVSWYDNEWGYSTRVVDLIRHMNSTK 337          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.158e-17
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 151
            F+GD+RSSIFDAKAGIALSK FVKLVSWYDNE GYSTRVVDLI H+A  +
Sbjct:  288 FIGDNRSSIFDAKAGIALSKNFVKLVSWYDNEMGYSTRVVDLIKHIASVE 337          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.387e-17
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 142
            FVGDSRSSIFDAKAGIAL+  FVK+VSWYDNEWGYS RV+DLI HMA
Sbjct:  287 FVGDSRSSIFDAKAGIALNGNFVKVVSWYDNEWGYSNRVIDLIRHMA 333          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3PC_MAGLI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.387e-17
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVD--LIVHMAKTQ 151
            F+GD+RSSIFDAKAGIAL++ FVKLVSWYDNEWGYS+RV+D  LIVHMA  Q
Sbjct:  290 FIGDNRSSIFDAKAGIALNEHFVKLVSWYDNEWGYSSRVIDLILIVHMASCQ 341          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P_RHIMI (Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizomucor miehei GN=GPD PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.200e-16
Identity = 38/48 (79.17%), Postives = 45/48 (93.75%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            F+GDS SSIFDAKAGI+L+  FVKL+SWYDNE+GYSTRVVDL+VH+AK
Sbjct:  284 FIGDSHSSIFDAKAGISLNPNFVKLISWYDNEYGYSTRVVDLLVHIAK 331          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P2_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.200e-16
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            F+GDSRSSIFDA AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H+AK
Sbjct:  284 FLGDSRSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P_PHYIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Phytophthora infestans GN=GPDA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.567e-16
Identity = 38/50 (76.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 151
            F+GDS SSIFDA+AGIAL+  FVKLVSWYDNEWGYS+RV+DLI HM K +
Sbjct:  283 FIGDSHSSIFDAEAGIALTDDFVKLVSWYDNEWGYSSRVLDLIEHMVKNE 332          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P3_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Saccharomyces cerevisiae GN=TDH3 PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 4.560e-16
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            F+GDS SSIFDA AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H+AK
Sbjct:  284 FLGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P_PHANO (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeosphaeria nodorum GN=GPD1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.956e-16
Identity = 37/46 (80.43%), Postives = 44/46 (95.65%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            GD+RSSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DL+V++AK
Sbjct:  287 GDTRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAK 332          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.956e-16
Identity = 37/46 (80.43%), Postives = 44/46 (95.65%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            GD+RSSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DL+V++AK
Sbjct:  287 GDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAK 332          
The following BLAST results are available for this feature:
BLAST of CK740206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
G3PE_MAIZE2.418e-1784.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETHY3.158e-1782.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETCR5.387e-1785.11Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAGLI5.387e-1778.85Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_RHIMI1.200e-1679.17Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizom... [more]
G3P2_CANGA1.200e-1683.33Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Cand... [more]
G3P_PHYIN1.567e-1676.00Glyceraldehyde-3-phosphate dehydrogenase OS=Phytop... [more]
G3P3_YEAST4.560e-1681.25Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Sacc... [more]
G3P_PHANO5.956e-1680.43Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeos... [more]
G3P_CURLU5.956e-1680.43Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6701 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740206 ID=CK740206; Name=CK740206; organism=Citrus sinensis; type=EST; length=199bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATGACAATGAGTGG
GGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACATGGCGAAGACCCA
GTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTTAGTTGTGCTAA
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