CK740206

Overview
NameCK740206
Unique NameCK740206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length199
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:322..520. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P_COLGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum gloeosporioides GN=GPDA PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.467e-14
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 2
Query:    5 VGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            +G+  SSIFDAKAGI+L+  FVKLVSWYDNEWGYS RV+DL+ H+AK
Sbjct:  287 IGNPNSSIFDAKAGISLNNNFVKLVSWYDNEWGYSRRVLDLLAHVAK 333          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P3_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhizomucor racemosus GN=GPD3 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.467e-14
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 142
            FVGD+ SSIFDAKAGI LS  FVKL+SWYDNE+GYSTRVVDL+ ++A
Sbjct:  287 FVGDAHSSIFDAKAGIQLSPTFVKLISWYDNEFGYSTRVVDLLAYVA 333          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P2_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Trichoderma koningii GN=gpd2 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.467e-14
Identity = 34/47 (72.34%), Postives = 42/47 (89.36%), Query Frame = 2
Query:    5 VGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            +G++ SSIFD KAGI+L+K FVKLVSWYDNEWGYS RV+DL+ H+AK
Sbjct:  287 LGNTNSSIFDIKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLAHVAK 333          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P_MONAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Monascus anka GN=GPD1 PE=3 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 1.916e-14
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            GD  SSIFDAKAGIAL+  FVKLVSWYDNEWGYS RV+DLI ++A+
Sbjct:  288 GDPHSSIFDAKAGIALNSNFVKLVSWYDNEWGYSRRVIDLIAYIAQ 333          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P_SCHCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Schizophyllum commune GN=GPD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.502e-14
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            F G + SSIFD+KAGIA+SK FVKL++WYDNEWGYS RV DL+V+ AK
Sbjct:  285 FTGANESSIFDSKAGIAISKSFVKLIAWYDNEWGYSRRVCDLLVYAAK 332          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P1_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces marxianus GN=GAP1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.502e-14
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 142
            F+GD+ S+IFDA AGI LS KFVKLV+WYDNE+GYSTRVVDL+ H+A
Sbjct:  283 FLGDTHSTIFDAAAGIQLSPKFVKLVAWYDNEYGYSTRVVDLVEHVA 329          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P_SCLSC (Glyceraldehyde-3-phosphate dehydrogenase OS=Sclerotinia sclerotiorum GN=GPD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.268e-14
Identity = 34/46 (73.91%), Postives = 42/46 (91.30%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            GD+ SSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DL+ +++K
Sbjct:  288 GDNHSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLHYISK 333          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P_COTJA (Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.268e-14
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 151
            F GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHMA  +
Sbjct:  284 FNGDSHSSTFDAGAGIALNDNFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P_COLLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Columba livia GN=GAPDH PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 3.268e-14
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 151
            F GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHMA  +
Sbjct:  284 FNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEYGYSNRVVDLMVHMASKE 333          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3PT_MACFA (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Macaca fascicularis GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.268e-14
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 139
            FVGDS SSIFDAKAGIAL+  FVKL+SWYDNE+GYS RVVDL+ +M
Sbjct:  359 FVGDSHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDLLRYM 404          
The following BLAST results are available for this feature:
BLAST of CK740206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
G3P_COLGL1.467e-1472.34Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P3_RHIRA1.467e-1476.60Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhiz... [more]
G3P2_TRIKO1.467e-1472.34Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Tric... [more]
G3P_MONAN1.916e-1476.09Glyceraldehyde-3-phosphate dehydrogenase OS=Monasc... [more]
G3P_SCHCO2.502e-1470.83Glyceraldehyde-3-phosphate dehydrogenase OS=Schizo... [more]
G3P1_KLUMA2.502e-1474.47Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_SCLSC3.268e-1473.91Glyceraldehyde-3-phosphate dehydrogenase OS=Sclero... [more]
G3P_COTJA3.268e-1474.00Glyceraldehyde-3-phosphate dehydrogenase OS=Coturn... [more]
G3P_COLLI3.268e-1474.00Glyceraldehyde-3-phosphate dehydrogenase OS=Columb... [more]
G3PT_MACFA3.268e-1478.26Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6701 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740206 ID=CK740206; Name=CK740206; organism=Citrus sinensis; type=EST; length=199bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATGACAATGAGTGG
GGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACATGGCGAAGACCCA
GTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTTAGTTGTGCTAA
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