CK740206

Overview
NameCK740206
Unique NameCK740206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length199
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P_CRYPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryphonectria parasitica PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.575e-14
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            G+  SSIFDAKAGI+L+  FVKLVSWYDNEWGYS RV+DLI H+AK
Sbjct:  287 GNPNSSIFDAKAGISLNDHFVKLVSWYDNEWGYSRRVLDLISHVAK 332          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.575e-14
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 142
            F GD+ SSIFDA AGI LS +FVKLVSWYDNEWGYS RVVDL+ + A
Sbjct:  286 FCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSHRVVDLVAYTA 332          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.575e-14
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            F+GD+ SSIFDA AGI LS KFVKLV+WYDNE+GYSTRVVDL+  +AK
Sbjct:  283 FLGDTNSSIFDAAAGIQLSPKFVKLVTWYDNEYGYSTRVVDLVELVAK 330          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P_CLAPU (Glyceraldehyde-3-phosphate dehydrogenase OS=Claviceps purpurea GN=GPD-1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.281e-14
Identity = 32/46 (69.57%), Postives = 42/46 (91.30%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            G++ SSIFDAKAGI+L+K FVKL++WYDNEWGYS RV+DL+ ++AK
Sbjct:  287 GNTNSSIFDAKAGISLNKNFVKLIAWYDNEWGYSRRVLDLLAYVAK 332          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P_ZYGRO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosaccharomyces rouxii PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.509e-14
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKT 148
            F+GD+ SSI DA AGI L+  FVKLVSWYDNE+GYSTRVVDL+ H+AK+
Sbjct:  284 FLGDAHSSIVDAAAGIQLTPTFVKLVSWYDNEFGYSTRVVDLVEHVAKS 332          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P3_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluyveromyces marxianus GN=GAP3 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.509e-14
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            F+GD+ SSIFDA AGI LS +FVKLVSWYDNE+GYSTRVVDL+  +AK
Sbjct:  283 FLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVDLVELVAK 330          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P2_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces marxianus GN=GAP2 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.509e-14
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            F+GD+ SSIFDA AGI LS +FVKLVSWYDNE+GYSTRVVDL+  +AK
Sbjct:  283 FLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVDLVELVAK 330          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P_TRIAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Trichoderma atroviride GN=gpd1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.242e-13
Identity = 33/47 (70.21%), Postives = 41/47 (87.23%), Query Frame = 2
Query:    5 VGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            +G++ SSIFD KAGI+L+  FVKLVSWYDNEWGYS RV+DL+ H+AK
Sbjct:  286 LGNNNSSIFDIKAGISLNPNFVKLVSWYDNEWGYSRRVLDLLEHVAK 332          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P_NEUCR (Glyceraldehyde 3-phosphate-dehydrogenase OS=Neurospora crassa GN=gpd-1 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.242e-13
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = 2
Query:    8 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            G+  SSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DLI +++K
Sbjct:  287 GNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLISYISK 332          
BLAST of CK740206 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.242e-13
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 2
Query:    2 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 145
            F+G   SSIFD KAGI LS  FVKL+SWYDNE+GYSTRVVDL+ H+AK
Sbjct:  285 FLGSDYSSIFDQKAGILLSPTFVKLISWYDNEFGYSTRVVDLLEHVAK 332          
The following BLAST results are available for this feature:
BLAST of CK740206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
G3P_CRYPA5.575e-1476.09Glyceraldehyde-3-phosphate dehydrogenase OS=Crypho... [more]
G3P2_SCHPO5.575e-1474.47Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]
G3P2_KLULA5.575e-1475.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_CLAPU7.281e-1469.57Glyceraldehyde-3-phosphate dehydrogenase OS=Clavic... [more]
G3P_ZYGRO9.509e-1471.43Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosa... [more]
G3P3_KLUMA9.509e-1475.00Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluy... [more]
G3P2_KLUMA9.509e-1475.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_TRIAT1.242e-1370.21Glyceraldehyde-3-phosphate dehydrogenase OS=Tricho... [more]
G3P_NEUCR1.242e-1373.91Glyceraldehyde 3-phosphate-dehydrogenase OS=Neuros... [more]
G3P_DEBHA1.242e-1372.92Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6701 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740206 ID=CK740206; Name=CK740206; organism=Citrus sinensis; type=EST; length=199bp
CTTTGTTGGTGACAGTAGGTCAAGTATCTTTGATGCCAAGGCTGGTATTG
CTTTGAGTAAGAAATTTGTGAAGCTTGTCTCATGGTATGACAATGAGTGG
GGCTACAGTACTCGTGTGGTGGATTTGATTGTCCACATGGCGAAGACCCA
GTAACTTACTCGGCGTGGCTTGAGTATGTAACACGCTTAGTTGTGCTAA
back to top