CK740210 | Citrus Genome Database

Overview


Name	CK740210
Unique Name	CK740210
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	649

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9788	contig	Csv1_Contig9788:32..677.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS18_ICTPU (40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.654e-33
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 3

Query:  336 RKITKMGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 482
            +K  K GKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH
Sbjct:   87 QKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135

HSP 2 Score: 81.2629 bits (199), Expect = 1.654e-33
Identity = 36/54 (66.67%), Postives = 48/54 (88.89%), Query Frame = 1

Query:   85 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D++KRAG
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAG 57

BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS18_RAT (40S ribosomal protein S18 OS=Rattus norvegicus GN=Rps18 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.154e-33
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 3

Query:  336 RKITKMGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 482
            +K  K GKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH
Sbjct:   87 QKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135

HSP 2 Score: 80.8777 bits (198), Expect = 2.154e-33
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 1

Query:   85 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAG
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAG 57

BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS18_PIG (40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.154e-33
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 3

Query:  336 RKITKMGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 482
            +K  K GKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH
Sbjct:   87 QKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135

HSP 2 Score: 80.8777 bits (198), Expect = 2.154e-33
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 1

Query:   85 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAG
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAG 57

BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS18_MOUSE (40S ribosomal protein S18 OS=Mus musculus GN=Rps18 PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.154e-33
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 3

Query:  336 RKITKMGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 482
            +K  K GKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH
Sbjct:   87 QKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135

HSP 2 Score: 80.8777 bits (198), Expect = 2.154e-33
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 1

Query:   85 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAG
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAG 57

BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS18_HUMAN (40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.154e-33
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 3

Query:  336 RKITKMGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 482
            +K  K GKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH
Sbjct:   87 QKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135

HSP 2 Score: 80.8777 bits (198), Expect = 2.154e-33
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 1

Query:   85 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAG
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAG 57

BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS18_CAPHI (40S ribosomal protein S18 OS=Capra hircus GN=RPS18 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.154e-33
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 3

Query:  336 RKITKMGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 482
            +K  K GKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH
Sbjct:   87 QKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135

HSP 2 Score: 80.8777 bits (198), Expect = 2.154e-33
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 1

Query:   85 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAG
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAG 57

BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS18_CANFA (40S ribosomal protein S18 OS=Canis familiaris GN=RPS18 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.154e-33
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 3

Query:  336 RKITKMGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 482
            +K  K GKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH
Sbjct:   87 QKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135

HSP 2 Score: 80.8777 bits (198), Expect = 2.154e-33
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 1

Query:   85 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAG
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAG 57

BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS18_BOVIN (40S ribosomal protein S18 OS=Bos taurus GN=RPS18 PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.154e-33
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 3

Query:  336 RKITKMGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 482
            +K  K GKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH
Sbjct:   87 QKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH 135

HSP 2 Score: 80.8777 bits (198), Expect = 2.154e-33
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 1

Query:   85 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            V  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAG
Sbjct:    4 VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAG 57

BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS18_DICDI (40S ribosomal protein S18 OS=Dictyostelium discoideum GN=rps18 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.710e-29
Identity = 34/50 (68.00%), Postives = 45/50 (90.00%), Query Frame = 1

Query:   97 DFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            +FQHI+R+ NTNVDG++KI +ALT +KG+GRR AN+VCKKAD+D +KRAG
Sbjct:   10 EFQHIIRIYNTNVDGRRKIQYALTCVKGVGRRFANLVCKKADIDTSKRAG 59

HSP 2 Score: 68.1662 bits (165), Expect = 1.710e-29
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 3

Query:  336 RKITKMGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 479
            +K  K GKYS  ++N +D+K R+DLERLKKIR HRG+RH++GLRVRGQ
Sbjct:   89 QKDIKDGKYSHCLANQIDVKFREDLERLKKIRAHRGVRHHFGLRVRGQ 136

BLAST of CK740210 vs. ExPASy Swiss-Prot
Match: RS13_METST (30S ribosomal protein S13P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps13p PE=3 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 1.782e-19
Identity = 21/54 (38.89%), Postives = 35/54 (64.81%), Query Frame = 1

Query:   85 VANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAG 246
            +A ++F+H++R+   +VDG   I  ALT I+GIG+  A  +CK  D+D + + G
Sbjct:    1 MAEQEFRHMVRITRKDVDGNSTIATALTEIRGIGKAFAIAICKVLDLDQDAQIG 54

HSP 2 Score: 45.8246 bits (107), Expect = 1.782e-19
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 3

Query:  354 GKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQ 479
            G+   ++ + L+M LRDDL R+K IR+++G RH  GL VRGQ
Sbjct:   90 GETKHLIESDLNMTLRDDLNRMKMIRSYKGKRHEVGLPVRGQ 131

HSP 3 Score: 40.4318 bits (93), Expect = 1.782e-19
Identity = 15/38 (39.47%), Postives = 25/38 (65.79%), Query Frame = 2

Query:  245 GELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGK 358
            G +    +  +  V+ NP++F IP+WFLNR+ DY+ G+
Sbjct:   54 GYIDDESVKQIEAVLENPQEFGIPEWFLNRRNDYETGE 91

The following BLAST results are available for this feature:

BLAST of CK740210 vs. ExPASy Swiss-Prot

BLAST of CK740210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45


Match Name	E-value	Identity	Description
RS18_ICTPU	1.654e-33	77.55	40S ribosomal protein S18 OS=Ictalurus punctatus G...	[more]
RS18_RAT	2.154e-33	77.55	40S ribosomal protein S18 OS=Rattus norvegicus GN=...	[more]
RS18_PIG	2.154e-33	77.55	40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 P...	[more]
RS18_MOUSE	2.154e-33	77.55	40S ribosomal protein S18 OS=Mus musculus GN=Rps18...	[more]
RS18_HUMAN	2.154e-33	77.55	40S ribosomal protein S18 OS=Homo sapiens GN=RPS18...	[more]
RS18_CAPHI	2.154e-33	77.55	40S ribosomal protein S18 OS=Capra hircus GN=RPS18...	[more]
RS18_CANFA	2.154e-33	77.55	40S ribosomal protein S18 OS=Canis familiaris GN=R...	[more]
RS18_BOVIN	2.154e-33	77.55	40S ribosomal protein S18 OS=Bos taurus GN=RPS18 P...	[more]
RS18_DICDI	1.710e-29	68.00	40S ribosomal protein S18 OS=Dictyostelium discoid...	[more]
RS13_METST	1.782e-19	38.89	30S ribosomal protein S13P OS=Methanosphaera stadt...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_6705 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67A05 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK740210 ID=CK740210; Name=CK740210; organism=Citrus sinensis; type=EST; length=649bp
CTTGGATACTTGCTGCAGCTTCATTTGTAGCCGAAGAGCCTCTCTTCTCT
TCATCATCAATCCTCACAATCGAAAATGTCTCTGGTGGCGAACGAAGATT
TTCAGCACATTTTGCGTGTGCTGAACACTAACGTCGACGGGAAGCAGAAG
ATTATGTTTGCTCTTACTTCAATTAAGGGTATTGGAAGGCGACTGGCTAA
CATCGTTTGCAAGAAAGCTGATGTTGACATGAACAAGAGGGCCGGGTGAA
CTATCTGCTGCTGAACTTGACAATCTCATGGTCGTTGTTGCAAATCCCCG
ACAGTTTAAAATCCCTGATTGGTTCTTGAACAGACAGAAAGATTACAAAG
ATGGGAAAGTATTCTCAGGTTGTATCCAATGCACTGGACATGAAGTTGAG
AGATGATTTGGAGCGTCTGAAGAAGATCAGGAACCACCGTGGTCTCAGGC
ACTACTGGGGTCTTCGTGTCCGGGGACAACACACCAAGACCACCGGTCGT
CGTGGAAAGACTGGTTGGTGTCTCCAAGAAGCGTTGAGCTGTCCGTTATC
AATGTTTTGAACAATCTATACACATGTTCAGGAAGAGTTTGGACTTGCTA
TTGCTGAACATTTGCATCAGACAATATTAGATTTATTTTCTTTTCTTTG