CK740218

Overview
NameCK740218
Unique NameCK740218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length413
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_ASPFU (Catalase A OS=Aspergillus fumigatus GN=catA PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.271e-18
Identity = 43/98 (43.88%), Postives = 63/98 (64.29%), Query Frame = 3
Query:    9 RPVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEVDYFPSRYD 302
            R +G L LN+N+D FF + E +AF    +VPGI +++D +LQ R F+Y DTQ  RLG N+  LP+N P CP  N++ DG M        V+Y+P+R++
Sbjct:  333 RVIGELELNRNVDEFFPQTEQVAFCTSHIVPGIDFTDDPLLQGRNFSYFDTQISRLGINWEELPINRPVCPVLNHNRDGQMRHRITQGTVNYWPNRFE 430          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_STAWA (Catalase OS=Staphylococcus warneri GN=katA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.080e-17
Identity = 55/145 (37.93%), Postives = 78/145 (53.79%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPSR---YDPTRHAERYPIPSDVITGRREKACIEKENNFKQPGERY 413
            VG   LN+N +N+F + E  AF P  +VPG+ YS DKMLQ R+F YGD QR+RLG N+  +PVN PK       CP      DG M  +  ++     Y+P+    YD     ++ P P+D   G       + +N F+QPG+ +
Sbjct:  294 VGEFELNRNPNNYFQDVEQAAFAPTNIVPGLDYSPDKMLQGRLFPYGDAQRYRLGVNHWQIPVNQPKGVGIENLCPFSR---DGQMRILDDNQGGGPHYYPNNQGVYDSQPEFKKPPFPADG-DGYEYNQRQDDDNYFEQPGKLF 434          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_STAAU (Catalase OS=Staphylococcus aureus GN=katA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.842e-17
Identity = 52/145 (35.86%), Postives = 80/145 (55.17%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPS---RYDPTRHAERYPIPSDVITGRREKACIEKENNFKQPGERY 413
            VG   LN+N DN+F + E  AF P  ++PG+ +S DKMLQ R+F+YGD QR+RLG N+  +PVN PK       CP      DG M  +  ++     ++P+   ++D     ++ P P+D   G       + +N F+QPG+ +
Sbjct:  294 VGEFELNRNPDNYFTDVEQAAFAPTNIIPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSR---DGQMRVVDNNQGGGTHHYPNNHGKFDSQPEYKKPPFPTDGY-GYEYNQRQDDDNYFEQPGKLF 434          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_TOXGO (Peroxisomal catalase OS=Toxoplasma gondii PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.406e-17
Identity = 55/140 (39.29%), Postives = 79/140 (56.43%), Query Frame = 3
Query:   12 PVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNH--YDGFMNF-MHRDEEVDYFPSRYDPTRHAERYPIPSDVITGRREKACIEKE---NNFKQPGERY 413
            PVG+LVL++N +N+F + E  AF P  +VPGI  S D+MLQ R+F+Y DT RHRLG NY  +PVN P      ++   DG M    ++  +++Y P+  D     +R    S   T     AC  +E   ++F+QPG  Y
Sbjct:  301 PVGKLVLDRNPENYFQDVEQAAFAPAHMVPGIEPSEDRMLQGRMFSYIDTHRHRLGANYHQIPVNRPWNARGGDYSVRDGPMCVDGNKGSQLNYEPNSVDGFPKEDRNAAVSGTTTVSGTVACHPQEHPNSDFEQPGNFY 440          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_STRCO (Catalase OS=Streptomyces coelicolor GN=katA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.406e-17
Identity = 61/140 (43.57%), Postives = 75/140 (53.57%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKC-PHRNNHY--DGFMNFMHRDEEV-DYFPSRYD---PTRHAERYPIPSDVITGRREKACIEKENNFKQPGERY 413
            VGRLVL++N DN FAE E  AF+P   VPGI  S DKMLQ R+FAY D  R+RLG N+  L VNAPK  P    +Y  DG M    +     +Y P+ YD    T      P+     TG  E     K+++F Q G  Y
Sbjct:  292 VGRLVLDRNPDNVFAEVEQAAFSPNNFVPGIGPSPDKMLQGRLFAYADAHRYRLGVNHTQLAVNAPKAVPGGAANYGRDGLMAANPQGRYAKNYEPNSYDGPAETGTPLAAPLAVSGHTGTHEAPLHTKDDHFVQAGALY 431          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATB_STAAA (Catalase-like protein OS=Staphylococcus aureus subsp. anaerobius GN=katB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.143e-17
Identity = 52/145 (35.86%), Postives = 80/145 (55.17%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPS---RYDPTRHAERYPIPSDVITGRREKACIEKENNFKQPGERY 413
            VG   LN+N DN+F + E +AF    ++PG+ +S DKMLQ R+F+YGD QR+RLG N+  +PVN PK       CP      DG M  +  ++     Y+P+   ++D     ++ P P+D   G       + +N F+QPG+ +
Sbjct:  294 VGEFELNRNPDNYFMDVEQVAFASTNIIPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSR---DGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGY-GYEYNQRQDDDNYFEQPGKLF 434          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_NEIGO (Catalase OS=Neisseria gonorrhoeae GN=katA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.105e-17
Identity = 43/95 (45.26%), Postives = 56/95 (58.95%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEVDYFPSRY 299
            V    LN+N +NFFA+ E  AF P  +VPGI  S DKMLQ R+F Y D QR+RLG N+  +PVN P+CP  +N  DG        +   Y P+ +
Sbjct:  294 VAEFELNRNPENFFADVEQSAFAPSNLVPGIGASPDKMLQARLFNYADAQRYRLGVNFRQIPVNRPRCPVHSNQRDGQGRATELRQPAHYEPNSF 388          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_STAHJ (Catalase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=katA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.001e-17
Identity = 52/147 (35.37%), Postives = 78/147 (53.06%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPS-----RYDPTRHAERYPIPSDVITGRREKACIEKENNFKQPGERY 413
            VG   LN+N +N+F + E  AF P  ++PG+ +S DKMLQ R+F+YGD QR+RLG N+  +PVN PK       CP      DG M F+  ++     Y+P+     +  P      +P+  D   G       + +N F+QPG+ +
Sbjct:  294 VGEFELNRNPENYFMDVEQAAFAPTNIIPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENMCPFSR---DGQMRFLDGNQGGGPHYYPNNKGVYQSQPEYKKPAFPVDGD---GYEYNQRQDDDNYFEQPGKLF 434          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_BACSU (Vegetative catalase OS=Bacillus subtilis GN=katA PE=1 SV=5)

HSP 1 Score: 85.8853 bits (211), Expect = 7.001e-17
Identity = 48/134 (35.82%), Postives = 74/134 (55.22%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNF-MHRDEEVDYFPSRYDPTRHAERYPIPSDVITGRREKACIEKENNFKQPGERY 413
            VGR+VL++N +N+FAE E   F+PG +VPGI  S DKMLQ R+FAY D  R+R+G N+  LP+N  +    N   DG M F  +    V Y P+ +   + +      +  + G  +    +  +++ Q G+ Y
Sbjct:  292 VGRMVLDRNPENYFAEVEQATFSPGTLVPGIDVSPDKMLQGRLFAYHDAHRYRVGANHQALPINRARNKVNNYQRDGQMRFDDNGGGSVYYEPNSFGGPKESPEDKQAAYPVQGIADSVSYDHYDHYTQAGDLY 425          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CAT1_NEUCR (Catalase-1 OS=Neurospora crassa GN=cat-1 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 7.001e-17
Identity = 44/98 (44.90%), Postives = 60/98 (61.22%), Query Frame = 3
Query:    9 RPVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEVDYFPSRYD 302
            R +G + LN+N D FF + E +AF    VV GI +S+D +LQ R F+Y DTQ  RLG N+  LP+N P CP  N + DG M        V+Y+P+R+D
Sbjct:  332 RYIGEMELNRNPDEFFPQTEQIAFCTSHVVNGIGFSDDPLLQGRNFSYFDTQISRLGVNFQELPINRPVCPVMNFNRDGAMRHTISRGTVNYYPNRFD 429          
The following BLAST results are available for this feature:
BLAST of CK740218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CATA_ASPFU8.271e-1843.88Catalase A OS=Aspergillus fumigatus GN=catA PE=3 S... [more]
CATA_STAWA1.080e-1737.93Catalase OS=Staphylococcus warneri GN=katA PE=3 SV... [more]
CATA_STAAU1.842e-1735.86Catalase OS=Staphylococcus aureus GN=katA PE=3 SV=... [more]
CATA_TOXGO2.406e-1739.29Peroxisomal catalase OS=Toxoplasma gondii PE=2 SV=... [more]
CATA_STRCO2.406e-1743.57Catalase OS=Streptomyces coelicolor GN=katA PE=3 S... [more]
CATB_STAAA3.143e-1735.86Catalase-like protein OS=Staphylococcus aureus sub... [more]
CATA_NEIGO4.105e-1745.26Catalase OS=Neisseria gonorrhoeae GN=katA PE=3 SV=... [more]
CATA_STAHJ7.001e-1735.37Catalase OS=Staphylococcus haemolyticus (strain JC... [more]
CATA_BACSU7.001e-1735.82Vegetative catalase OS=Bacillus subtilis GN=katA P... [more]
CAT1_NEUCR7.001e-1744.90Catalase-1 OS=Neurospora crassa GN=cat-1 PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6713 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740218 ID=CK740218; Name=CK740218; organism=Citrus sinensis; type=EST; length=413bp
CCTCGTGCCGGCCAGTTGGACGCTTGGTCTTGAACAAGAACATCGATAAT
TTCTTTGCGGAAAATGAAATGCTTGCATTTAACCCTGGTATCGTGGTTCC
TGGGATCTACTACTCAAATGATAAGATGCTCCAATGTCGAATCTTTGCCT
ATGGTGATACCCAGAGGCATCGCCTTGGACCCAACTACTTGATGCTTCCA
GTTAATGCACCCAAATGTCCTCATCGCAACAATCATTATGATGGTTTCAT
GAATTTCATGCACAGGGATGAGGAGGTCGATTACTTTCCTTCGAGGTATG
ATCCTACTCGTCATGCTGAGAGATATCCCATTCCTTCTGATGTAATTACA
GGAAGGCGTGAGAAGGCTTGCATTGAGAAGGAAAACAACTTCAAGCAGCC
TGGAGAGAGATAC
back to top