CK740218

Overview
NameCK740218
Unique NameCK740218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length413
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_VIBF1 (Catalase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=katA PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.103e-21
Identity = 49/79 (62.03%), Postives = 57/79 (72.15%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFM 251
            VG   LN+N  NFFAE E  AFNP  VVPGI +S DKMLQ R+FAYGD QR+RLG N+  +PVNAP+CP  + H DG M
Sbjct:  291 VGEFELNRNPQNFFAEVEQSAFNPANVVPGISFSPDKMLQGRLFAYGDAQRYRLGVNHQHIPVNAPRCPVHSYHRDGAM 369          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_HELPY (Catalase OS=Helicobacter pylori GN=katA PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.103e-21
Identity = 49/93 (52.69%), Postives = 64/93 (68.82%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEVDYFPS 293
            VG + LNKN +N+FAE E  AF+P  VVPGI YS D+MLQ R+F+YGDT R+RLG NY  +PVN P+CP  ++  DG+M   +     +Y PS
Sbjct:  294 VGIVELNKNPENYFAEVEQAAFSPANVVPGIGYSPDRMLQGRLFSYGDTHRYRLGVNYPQIPVNKPRCPFHSSSRDGYMQNGYYGSLQNYTPS 386          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_BORPE (Catalase OS=Bordetella pertussis GN=katA PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.103e-21
Identity = 57/133 (42.86%), Postives = 78/133 (58.65%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNF-MHRDEEVDYFPSRYDPTRHAERYPIPSDVITGRREKACIEK--ENNFKQPG 404
            VG L LNKN +N+FAE E  AF P  VVPGI +S DKMLQ R+F+YGDT R+RLG N+  +PVNAP+CP  + H DG      +    ++Y P+ +   R A+    P   + G+       +  E+ + QPG
Sbjct:  295 VGVLELNKNPENYFAEVEQAAFTPANVVPGIGFSPDKMLQGRLFSYGDTHRYRLGINHHQIPVNAPRCPFHSFHRDGMGRVDGNGGATLNYEPNSFGEWREAKHAAEPPLALDGQAADRWNHRVDEDYYSQPG 427          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_BORPA (Catalase OS=Bordetella parapertussis GN=katA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.103e-21
Identity = 57/133 (42.86%), Postives = 78/133 (58.65%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNF-MHRDEEVDYFPSRYDPTRHAERYPIPSDVITGRREKACIEK--ENNFKQPG 404
            VG L LNKN +N+FAE E  AF P  VVPGI +S DKMLQ R+F+YGDT R+RLG N+  +PVNAP+CP  + H DG      +    ++Y P+ +   R A+    P   + G+       +  E+ + QPG
Sbjct:  295 VGVLELNKNPENYFAEVEQAAFTPANVVPGIGFSPDKMLQGRLFSYGDTHRYRLGINHHQIPVNAPRCPFHSFHRDGMGRVDGNGGATLNYEPNSFGEWREAKHAAEPPLALDGQAADRWNHRVDEDYYSQPG 427          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_BORBR (Catalase OS=Bordetella bronchiseptica GN=katA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.103e-21
Identity = 57/133 (42.86%), Postives = 78/133 (58.65%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNF-MHRDEEVDYFPSRYDPTRHAERYPIPSDVITGRREKACIEK--ENNFKQPG 404
            VG L LNKN +N+FAE E  AF P  VVPGI +S DKMLQ R+F+YGDT R+RLG N+  +PVNAP+CP  + H DG      +    ++Y P+ +   R A+    P   + G+       +  E+ + QPG
Sbjct:  295 VGVLELNKNPENYFAEVEQAAFTPANVVPGIGFSPDKMLQGRLFSYGDTHRYRLGINHHQIPVNAPRCPFHSFHRDGMGRVDGNGGATLNYEPNSFGEWREAKHAAEPPLALDGQAADRWNHRVDEDYYSQPG 427          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_HELPJ (Catalase OS=Helicobacter pylori J99 GN=katA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.747e-21
Identity = 49/93 (52.69%), Postives = 63/93 (67.74%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEVDYFPS 293
            VG + LNKN +N+FAE E  AF P  VVPGI YS D+MLQ R+F+YGDT R+RLG NY  +PVN P+CP  ++  DG+M   +     +Y PS
Sbjct:  294 VGIVELNKNPENYFAEVEQAAFTPANVVPGIGYSPDRMLQGRLFSYGDTHRYRLGVNYPQIPVNRPRCPFHSSSRDGYMQNGYYGSLQNYTPS 386          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_DROME (Catalase OS=Drosophila melanogaster GN=Cat PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.588e-21
Identity = 51/106 (48.11%), Postives = 70/106 (66.04%), Query Frame = 3
Query:   12 PVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAP-KCPHRNNHYDGFMNFM-HRDEEVDYFPSRYDPTRHAER 323
            PVG++VL++N  N+FAE E +AF+P  +VPG+  S DKML  R+F+Y DT RHRLGPNYL +PVN P K    N   DG MN   ++D   +YFP+ ++  +   R
Sbjct:  310 PVGKMVLDRNPKNYFAEVEQIAFSPAHLVPGVEPSPDKMLHGRLFSYSDTHRHRLGPNYLQIPVNCPYKVKIENFQRDGAMNVTDNQDGAPNYFPNSFNGPQECPR 415          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA1_CAEEL (Peroxisomal catalase 1 OS=Caenorhabditis elegans GN=ctl-2 PE=2 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 3.588e-21
Identity = 56/133 (42.11%), Postives = 79/133 (59.40%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHR----NNHYDGFMNFMHRDEEVDYFPSRYDPTRHAERYPIPSDVITGRREKACIEKENNFKQP 401
            VG++VLN+N  N+FAE E  AF P  +VPGI +S DKMLQ RIF+Y DT  HRLGPNY+ LPVN   CP+R    N   DG M + ++    ++FP+ ++  +        +   TG  ++     +NN+ QP
Sbjct:  309 VGKMVLNRNPRNYFAEVEQSAFCPAHIVPGIEFSPDKMLQGRIFSYTDTHFHRLGPNYIQLPVN---CPYRSRAHNTQRDGAMAYDNQQHAPNFFPNSFNYGKTRPDVKDTTFPATGDVDRYESGDDNNYDQP 438          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_BOVIN (Catalase OS=Bos taurus GN=CAT PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 7.992e-21
Identity = 55/106 (51.89%), Postives = 69/106 (65.09%), Query Frame = 3
Query:   12 PVGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHR----NNHYDGFMNFM-HRDEEVDYFPSRYDPTRH 314
            PVG+LVLN+N  N+FAE E LAF+P  + PGI  S DKMLQ R+FAY DT RHRLGPNYL +PVN   CP+R    N   DG M  M ++    +Y+P+ +    H
Sbjct:  312 PVGKLVLNRNPVNYFAEVEQLAFDPSNMPPGIEPSPDKMLQGRLFAYPDTHRHRLGPNYLQIPVN---CPYRARVANYQRDGPMCMMDNQGGAPNYYPNSFSAPEH 414          
BLAST of CK740218 vs. ExPASy Swiss-Prot
Match: CATA_PROMI (Catalase OS=Proteus mirabilis GN=katA PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.363e-20
Identity = 45/79 (56.96%), Postives = 57/79 (72.15%), Query Frame = 3
Query:   15 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFM 251
            VG   LN+N DN+F++ E  AF+P  +VPGI +S DKMLQ R+F+YGD  R+RLG N+  +PVNAPKCP  N H DG M
Sbjct:  292 VGYFELNRNPDNYFSDVEQAAFSPANIVPGISFSPDKMLQGRLFSYGDAHRYRLGVNHHQIPVNAPKCPFHNYHRDGAM 370          
The following BLAST results are available for this feature:
BLAST of CK740218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CATA_VIBF12.103e-2162.03Catalase OS=Vibrio fischeri (strain ATCC 700601 / ... [more]
CATA_HELPY2.103e-2152.69Catalase OS=Helicobacter pylori GN=katA PE=1 SV=2[more]
CATA_BORPE2.103e-2142.86Catalase OS=Bordetella pertussis GN=katA PE=1 SV=1[more]
CATA_BORPA2.103e-2142.86Catalase OS=Bordetella parapertussis GN=katA PE=3 ... [more]
CATA_BORBR2.103e-2142.86Catalase OS=Bordetella bronchiseptica GN=katA PE=3... [more]
CATA_HELPJ2.747e-2152.69Catalase OS=Helicobacter pylori J99 GN=katA PE=3 S... [more]
CATA_DROME3.588e-2148.11Catalase OS=Drosophila melanogaster GN=Cat PE=1 SV... [more]
CATA1_CAEEL3.588e-2142.11Peroxisomal catalase 1 OS=Caenorhabditis elegans G... [more]
CATA_BOVIN7.992e-2151.89Catalase OS=Bos taurus GN=CAT PE=1 SV=3[more]
CATA_PROMI1.363e-2056.96Catalase OS=Proteus mirabilis GN=katA PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6713 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740218 ID=CK740218; Name=CK740218; organism=Citrus sinensis; type=EST; length=413bp
CCTCGTGCCGGCCAGTTGGACGCTTGGTCTTGAACAAGAACATCGATAAT
TTCTTTGCGGAAAATGAAATGCTTGCATTTAACCCTGGTATCGTGGTTCC
TGGGATCTACTACTCAAATGATAAGATGCTCCAATGTCGAATCTTTGCCT
ATGGTGATACCCAGAGGCATCGCCTTGGACCCAACTACTTGATGCTTCCA
GTTAATGCACCCAAATGTCCTCATCGCAACAATCATTATGATGGTTTCAT
GAATTTCATGCACAGGGATGAGGAGGTCGATTACTTTCCTTCGAGGTATG
ATCCTACTCGTCATGCTGAGAGATATCCCATTCCTTCTGATGTAATTACA
GGAAGGCGTGAGAAGGCTTGCATTGAGAAGGAAAACAACTTCAAGCAGCC
TGGAGAGAGATAC
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